Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2625 ATGGAGGACGAGAGCGCGAGCATGGTGATTGAGTTGGTGAACGAGATAGCGAGCATCTCCGATTACAGGCCCACGGTGAAGAAGCAGTACTGCAACTTGGCGCGGCGGCTGAAGCTGCTGATCCCGATGTTCGAGGAGATTCGGGACATGAAGGAGGCGATTCCCGAGGACACCTCGAAAGCCGTGCTCGCCTTCAAGGAAGCTCTCGAATCCGCCAGGGAACTCCTCAGATTCGGGAGCGAAGGGAGCAAGCTTTACTTGGTCCTCGAGAGGGAcgaaattatgaataaattctACGATGTGACAGCTCAGTTGGAACAGTCGTTGGGTGGTATTTCCTATGATAAACTTGATATATCAGATGAAGTTAAAGAGCAGGTTGAGCTGGTTCTTGCCCAGTTCAGAAGAGCTAAAGGGAGGGTTGATGAACCAGATGTCAGGTTGTATGAGGATATGTTGTCCCTTTACAACAGCAGTAGTGAGGCAGCTACAGATCCATCTGTTCTAAGTCAATTAGCTGAAAAATTGCAATTGATGGGAATAGCTGATCTTACACAAGAATCACTTGCTTTGCATGAGATGGTGGCAGCAAGTGGAGGGGATCCAGGGGCACACATTGAGAAAATGTCGATGTTATTGAAGAAGATAAAGGATTACGTGCAAACAGAAAATCTAGACAAGGATGATAATTTAGGAGGAAAAGACATTTCCTCAAAAGTCTGTGGACTTGGGACAAATGAAAAGAATCATCAGGCTCCTGTTATCCCTGATGATTTTCGATGTCCGATTTCCCTGGAATTAATGAAGGATCCTGTCATTGTTTCAACAGGACAGACTTATGAGCGTGCTTGTATTGAGAAGTGGTTGCAAGCAGGGCACGGGACATGCCCCAAAACACGGCAGACTCTCACTAGTACTGTTCTCACACCCAACTATGTCTTACGAAGCCTTATAGCACAATGGTGTGAAGCCAATGGCATAGAGCCACCAAAACGACCCAGCAGTTCACAACCTAGTAAATCAGCATCAGCCTACTCACCCGCTGAGCGAAGTAAGATTGAAAGTCTTCTCCAAAAGCTCACATCTGGCAGTCCTGAAGACCAGAGATCAGCTGCAGGTGAGATCCGCCTTCTTGCAAAGCGCAATGCAGATAACCGTGTTGCCATTGCTGAAGCTGGTGCAATACCTCTCCTTGTTGGTCTCCTATCTGTGCCTGACTCCCGCACTCAAGAACATGCTGTGACAGCACTTCTGAATCTTtccatatatgaaaataacaaaggaaGCATTGTTTCTTCAGGAGCAGTTCCAGGTATAGTTCATGTGCTGAAGAAGGGAAGCATGGAAGCTCGAGAAAATGCTGCTGCAACACTTTTCAGCCTTTCAGTTATAGATGAAAATAAAGTTACAATTGGCTCTTTAGGAGCTATACCACCACTAGTGACACTGTTGAGTGAGGGTACCCAAAGGGGTAAGAAAGATGCTGCAACAGCACTCTTCAATTTGTGCATTTACCAGGGCAACAAGGGAAAGGCAGTGAGGGCTGGCGTTATTCCCACACTGATGCGACTGCTGACTGAACCTAGTGGGGGAATGGTGGATGAAGCATTAGCCATTTTGGCAATATTGGCTAGCCATCCTGAAGGGAAGGCTACCATTAGAGCTGCAGAGGCAGTGCCAGTTTTGGTAGTGTTTATTGGGAATGGCTCCCCAAGGAACAAAGAGAATGCAGCTGCTGTTTTAGTTCACCTCTGTTCTGGAGATCCACAATATCTAGCACAGGCCCAAGAGCTGGGGGTGATGGGTCCACTGTTGGAATTGGCTCAAAATGGTACAGACAGAGGCAAAAGAAAGGCTGCACAATTGCTAGAGCGTATGAACAGGTTCCTTGAACAACAGCAGGAAGTTCCAACACAAACTGAAACTCCAGCTCAGAACGAGGATGCCCAACCACCTTTGATTACTAACCCCGATGATTCCTAA 1983 0.4644 MEDESASMVIELVNEIASISDYRPTVKKQYCNLARRLKLLIPMFEEIRDMKEAIPEDTSKAVLAFKEALESARELLRFGSEGSKLYLVLERDEIMNKFYDVTAQLEQSLGGISYDKLDISDEVKEQVELVLAQFRRAKGRVDEPDVRLYEDMLSLYNSSSEAATDPSVLSQLAEKLQLMGIADLTQESLALHEMVAASGGDPGAHIEKMSMLLKKIKDYVQTENLDKDDNLGGKDISSKVCGLGTNEKNHQAPVIPDDFRCPISLELMKDPVIVSTGQTYERACIEKWLQAGHGTCPKTRQTLTSTVLTPNYVLRSLIAQWCEANGIEPPKRPSSSQPSKSASAYSPAERSKIESLLQKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQEHAVTALLNLSIYENNKGSIVSSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSLGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPSGGMVDEALAILAILASHPEGKATIRAAEAVPVLVVFIGNGSPRNKENAAAVLVHLCSGDPQYLAQAQELGVMGPLLELAQNGTDRGKRKAAQLLERMNRFLEQQQEVPTQTETPAQNEDAQPPLITNPDDS 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2625 660 Pfam U-box domain 255 325 IPR003613 GO:0004842|GO:0016567
Ssu3g2625 660 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Ssu3g2625 660 PANTHER U BOX DOMAIN-CONTAINING 5 643 - -
Ssu3g2625 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 393 435 IPR000225 GO:0005515
Ssu3g2625 660 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Ssu3g2625 660 Gene3D - 339 640 IPR011989 -
Ssu3g2625 660 MobiDBLite consensus disorder prediction 632 660 - -
Ssu3g2625 660 Gene3D - 4 114 IPR036537 GO:0007166
Ssu3g2625 660 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 643 - -
Ssu3g2625 660 SUPERFAMILY ARM repeat 353 627 IPR016024 -
Ssu3g2625 660 CDD RING-Ubox_PUB 259 301 IPR045210 -
Ssu3g2625 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515
Ssu3g2625 660 MobiDBLite consensus disorder prediction 328 347 - -
Ssu3g2625 660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 328 IPR013083 -
Ssu3g2625 660 SUPERFAMILY RING/U-box 250 331 - -
Ssu3g2625 660 MobiDBLite consensus disorder prediction 330 347 - -
Ssu3g2625 660 SMART arm_5 423 463 IPR000225 GO:0005515
Ssu3g2625 660 SMART arm_5 588 628 IPR000225 GO:0005515
Ssu3g2625 660 SMART arm_5 505 545 IPR000225 GO:0005515
Ssu3g2625 660 SMART arm_5 464 504 IPR000225 GO:0005515
Ssu3g2625 660 SMART arm_5 546 586 IPR000225 GO:0005515
Ssu3g2625 660 SMART arm_5 382 422 IPR000225 GO:0005515
Ssu3g2625 660 Pfam Armadillo/beta-catenin-like repeat 547 586 IPR000225 GO:0005515
Ssu3g2625 660 Pfam Armadillo/beta-catenin-like repeat 465 503 IPR000225 GO:0005515
Ssu3g2625 660 Pfam Armadillo/beta-catenin-like repeat 382 421 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2625 Ssu-Chr3 79805052 79809652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2625 1 660 U-box Gene Family AT3G46510 69.834 0.0 922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2625 3 79805052 79809652 Ssu3g2625 3 79805052 79809652 ECH