Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2623 ATGGAGAGTGGTGGGAACGAGGAGGTGGAGATGGGAATGGGAGGGACTAATGGGGTTCCAGCGAGTTCGCGGTGGAACCCTACAAAAGAGCAAATAAGCATGCTAGAGAACCTCTATAAGCAGGGAATAAAGACTCCAAGTGCTGAGGAGATACAGCAGATAACTGCTAGGCTCAGGGCGTATGGTCACATCGAAGGAAAGAATGTCTTCTACTGGTTTCAGAATCACAAGGCCAGGCAGAGACAGAAGCAGAAGCAAGAAACCATCGCTTATTTCAACCGCTTTCTTCATACGCCCCAGCCCTTTTTTTCTCCGCCAATTTGCCCAAATGCCCTCTGTTCCCCATATCGCATAACTCAGGCGCAGAGTGAAATTGGCTTTTACCCCCCACATCCAAAGGTGCTTGTACCCGTAGGTTTTAGGAGGAGCCCATCTGAGAAAGTTGTGCCCACAGGCATGTCAAACATCTGTAGTGGCCCACTGGTATACGAAGGCATGCAACAGAGAATTTCGGATGGTAACTTCAGCTACAGTAACCAAGAAACATTGAATCTCTTTCCTCTGCACCCAACTGGCATTTTGGAAGGAAAAACAACGGACCAGGTGTCTTCTCTGGCTTCAGTTTCTGCTGATAGTTCCACTGATACACCTTCTGCTTCTCCTGATATCAATGAAGACGATGATTCTCCACTAAACCAACccttctttgatttttttactaCTTCTGGTCAAGGTTCTTAA 741 0.4629 MESGGNEEVEMGMGGTNGVPASSRWNPTKEQISMLENLYKQGIKTPSAEEIQQITARLRAYGHIEGKNVFYWFQNHKARQRQKQKQETIAYFNRFLHTPQPFFSPPICPNALCSPYRITQAQSEIGFYPPHPKVLVPVGFRRSPSEKVVPTGMSNICSGPLVYEGMQQRISDGNFSYSNQETLNLFPLHPTGILEGKTTDQVSSLASVSADSSTDTPSASPDINEDDDSPLNQPFFDFFTTSGQGS 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2623 246 CDD homeodomain 24 84 IPR001356 GO:0003677
Ssu3g2623 246 MobiDBLite consensus disorder prediction 204 227 - -
Ssu3g2623 246 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 8 244 IPR044555 GO:0003700|GO:0099402
Ssu3g2623 246 MobiDBLite consensus disorder prediction 1 25 - -
Ssu3g2623 246 SMART HOX_1 20 87 IPR001356 GO:0003677
Ssu3g2623 246 Gene3D - 22 90 - -
Ssu3g2623 246 Pfam Homeodomain 22 82 IPR001356 GO:0003677
Ssu3g2623 246 MobiDBLite consensus disorder prediction 204 236 - -
Ssu3g2623 246 PANTHER TRANSCRIPTION FACTOR HOMOBOX-WOX FAMILY-RELATED 8 244 - -
Ssu3g2623 246 ProSiteProfiles 'Homeobox' domain profile. 18 83 IPR001356 GO:0003677
Ssu3g2623 246 SUPERFAMILY Homeodomain-like 23 89 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2623 Ssu-Chr3 79761674 79763043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2623 18 240 Wox Gene Family AT5G59340 43.775 3.02e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Ssu3g2623 Homeodomain 5.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2623 - - pvu:PHAVU_011G064900g 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2623 3 79761674 79763043 Ssu3g2623 3 79761674 79763043 ECH