Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2622 ATGGATATGTTCAAGAAGTGTGTGGAGCTTGTGGACAAGTGTCTGCGAGATGCAAAGATGGACAAGAGCGGCATCCACAAGGTTGTTCTTGTCGGTGGATCTACTAGGATCCCTAAGGTTCAACAGCTGCTGCAGGAGTTCTTTAATGGGAAGGAGCTTTGCCAGAGCATCAACCTTGATGAAGTTGTTGCCTATGGTGCTGCTGTGTAG 210 0.481 MDMFKKCVELVDKCLRDAKMDKSGIHKVVLVGGSTRIPKVQQLLQEFFNGKELCQSINLDEVVAYGAAV 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2622 69 Gene3D - 55 69 - -
Ssu3g2622 69 Gene3D - 7 54 - -
Ssu3g2622 69 PRINTS 70kDa heat shock protein signature 25 41 - -
Ssu3g2622 69 PRINTS 70kDa heat shock protein signature 57 69 - -
Ssu3g2622 69 SUPERFAMILY Actin-like ATPase domain 2 69 IPR043129 -
Ssu3g2622 69 Pfam Hsp70 protein 2 69 IPR013126 GO:0005524|GO:0140662
Ssu3g2622 69 ProSitePatterns Heat shock hsp70 proteins family signature 3. 28 42 IPR018181 -
Ssu3g2622 69 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 1 69 - -
Ssu3g2622 69 PANTHER HEAT SHOCK PROTEIN 70KDA 1 69 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2622 Ssu-Chr3 79740484 79740693 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2622 1 69 Calmodulin-binding Proteins AT3G12580 82.609 1.74e-35 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2622 K03283 - pda:103696725 123.635