Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2621 ATGGCTGAAGAAGGCGAGGGTCCGGCGATCGGAATCAATTTGGGAACGACTTACTCTCGCGTCGCCGTTTGGCAGCACGATTGTGTTGAAATCATAGCCGACGATCAGGGTAATAGGACTACCCCATCCTACGTTGTTTTCAGTGATACAGAATGCTTGATTGGCGATGCGGCAAAGAACCAGAAAAAATTGAAGTAG 198 0.4848 MAEEGEGPAIGINLGTTYSRVAVWQHDCVEIIADDQGNRTTPSYVVFSDTECLIGDAAKNQKKLK 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2621 65 Gene3D - 1 65 - -
Ssu3g2621 65 PRINTS 70kDa heat shock protein signature 58 65 - -
Ssu3g2621 65 PRINTS 70kDa heat shock protein signature 8 21 - -
Ssu3g2621 65 PRINTS 70kDa heat shock protein signature 36 48 - -
Ssu3g2621 65 Pfam Hsp70 protein 9 62 IPR013126 GO:0005524|GO:0140662
Ssu3g2621 65 PANTHER HEAT SHOCK PROTEIN 70KDA 1 62 IPR013126 GO:0005524|GO:0140662
Ssu3g2621 65 SUPERFAMILY Actin-like ATPase domain 8 61 IPR043129 -
Ssu3g2621 65 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2621 Ssu-Chr3 79738410 79738726 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2621 1 61 Calmodulin-binding Proteins AT1G56410 81.967 1.78e-29 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2621 K03283 - ming:122086297 105.145