Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2620 ATGGTGAACCATTTTGTTCAGGAATTCAAGAGGAAGAACAAGAAGGATATTATTGGAAATGCCAGAGCTCTGAGGAGGTTGAGAACCGCATGTGAGAGGGCCAAGAGGACCCTCTCTTCCACTGCTCAAACCACCATCGAGATTGATTCGCTGTACGAGGGTATTGACTTTTACACAACCATCACCCGTGCTCGGTTTGAAGAGCTTAACATGGATCTGTTCAGGAAGTGTATGGAGCCTGTGGAGAAGTGTTTGCGGGACGCAAAGATGGATAAGAGCAGCGTCCATGATGTTGTTCTTGTCGGTGGTTCTACTAGGATCCCCAAGGTTCAACAGCTGTTGCAGGACTTCTTCAATGGGAAGGAGCTTTGCAAGAGCATTAACCCCGATGAAGCTGTTGCCTATGGTGCTGCCGTGCAGGCTGCTATCCTCAGCGGCGAGGGTAATGAGAAAGTGCAGGATCTTCTCTTGCTGGATGTTACTCCTCTCTCCCTTGGTTTGGAGACTGCAGGAGGAGTCATGACTGTGTTGATTCCCAGAAACACAACCATTCCCACCAAGAAGGAGCAGGTGTTCTCAACCTACTCCGACAATCAGCCCGGTGTGTTGATTCAGGTCTATGAAGGTGAACGTACAAGGACTCGTGATAACAATTTGCTAGGCAAATTTGAGTTGTCAGGAATTCCTCCTGCTCCCAGGGGTGTTCCTCAGATCAATGTTTGCTTCGATATTGATGCCAACGGTATATTGAACGTGTCTGCCGAGGACAAAACCACTGGACAAAAGAACAAGATTACAATTACCAACGACAAGGGCAGGCTTTCTAAAGAGGAGATTGAGACGATGGTGCAGGAAGCTGAGAAGTACAAGGCTGAGGACGAGGAGCATAAGAAGAAAGTGGAGGCCAAAAATGCGCTGGAGAATTATGCCTATAACATGAGGAACACAATCAAAGATGACAAGATTGCTTCCAAGTTGCCTGCTGATGATAAGAAGAAGATTGAAGATGCGATTGAGCAGGCTATCCAATGGCTCGACGGAAACCAACTTGCTGAGGCTGACGAATTTGAGGACAAGATGAAGGAGTTGGAGAGCATTTGCAACCCTATCATTGCTAGGATGTACCAAGGTGCTGGTGGTGATGCGGGTGGAGCCATGGATGAGGATGGTCCTCCTGCTGGCAGTGGAAGCGGTGCTGGACCCAAAATTGAGGAAGTCGATTAA 1224 0.4812 MVNHFVQEFKRKNKKDIIGNARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIETMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTIKDDKIASKLPADDKKKIEDAIEQAIQWLDGNQLAEADEFEDKMKELESICNPIIARMYQGAGGDAGGAMDEDGPPAGSGSGAGPKIEEVD 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2620 407 Gene3D - 125 142 - -
Ssu3g2620 407 MobiDBLite consensus disorder prediction 377 407 - -
Ssu3g2620 407 Pfam Hsp70 protein 1 376 IPR013126 GO:0005524|GO:0140662
Ssu3g2620 407 Gene3D - 303 377 IPR029048 -
Ssu3g2620 407 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 150 307 IPR029047 -
Ssu3g2620 407 ProSitePatterns Heat shock hsp70 proteins family signature 3. 98 112 IPR018181 -
Ssu3g2620 407 PRINTS 70kDa heat shock protein signature 235 251 - -
Ssu3g2620 407 PRINTS 70kDa heat shock protein signature 95 111 - -
Ssu3g2620 407 PRINTS 70kDa heat shock protein signature 127 147 - -
Ssu3g2620 407 PRINTS 70kDa heat shock protein signature 154 173 - -
Ssu3g2620 407 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 301 382 IPR029048 -
Ssu3g2620 407 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 149 302 IPR029047 -
Ssu3g2620 407 Gene3D Actin; Chain A, domain 4 1 76 - -
Ssu3g2620 407 Gene3D - 77 124 - -
Ssu3g2620 407 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 1 387 - -
Ssu3g2620 407 SUPERFAMILY Actin-like ATPase domain 1 146 IPR043129 -
Ssu3g2620 407 PANTHER HEAT SHOCK PROTEIN 70KDA 1 387 IPR013126 GO:0005524|GO:0140662
Ssu3g2620 407 Coils Coil 279 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2620 Ssu-Chr3 79729850 79731073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2620 1 407 Calmodulin-binding Proteins AT3G12580 93.888 0.0 762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2620 3 79729850 79731073 Ssu3g2620 3 79729850 79731073 ECH
Ssu7g2302 7 45188629 45190260 Ssu3g2620 3 79729850 79731073 ECH