Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2619 ATGAGAAGCTGCACCGTCTCCTGCACAGTCCCCTTGAAAAGCTTCTCATCCATGGCGAAGACGCTGATTTCGTCTCCATCGTTCGTCGGCACGCCGCTTCCCTCACTCCCTCGCCGCCACTTCCCCCACCGCACCAGGCTAGTCGCCACCAAGGTCCACGTCAGCTTCCACCAAATCCCCCCAATTCAGTCCATAAACCACTCCATTGACTTCGCCGGAATCGCCACCAGAGCCGAAGGCCTCCTTTACACGCTCGCCGACGCCACGGTTGCGGCGGACCCGGCGACTTCCACCACCGATGCTGCCGTGCAGAAGAGCGGAGGCTGGTTCGGCTTCATCTCCGAAGCCATGGAGTTCGTTCTCAAGGTGTTGAAGGATGGTCTTTCTGCCGTGCATGTGCCTTATGCATATGGATTTGCTATCATATTGCTCACTGTTATAGTTAAGGCTGCAACGCTTCCCTTGACTAAGCAACAGGTTGAATCTACACTGGCTATGCAAAATCTTCAACCAAAAATTAAGGCCATTCAAGAAAGATATGCTGGCAATCAGGAAAGAATACAACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTAACCCATTGGCAGGTTGTTTTCCAACTTTGGTTACAATTCCAGTTTGGATTGGTCTCTACCAAGCTTTGTCAAATGTGGCAAATGagGGATTGTTAACAGAAGGTTTCTTTTGGATCCCCTCTTTGGGTGGTCCTACTACCATTGCTGCTAGACAAAGTGGAGCTGGGATTTCGTGGCTTTTCCCATTTGTGGATGGGCATCCACCTTTGGGTTGGCAAGATACTGCAGCATATCTTGTTTTACCTATTCTTCTTGTTGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAGACAGATCCTTCTCAAAAGAATTCACTTCTTGTTTTAAAGTTTCTTCCACTCATGATCGGCTACTTCTCACTATCTGTCCCATCAGGACTAACAATTTACTGGTTTACAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTACGAAAATATGGAGGTGCAAAACCTGTTGTGGATGAAAATGCTGGTGGAATTATTACTGCAGGGCGTGCTAAAAGATCAGCTTCGCAACCAGCAAAGGGCGGTGAAAGGTTTAAGCAgttaaaagaagaggaaaagaagaaaaagttaagCAAGGCACTTCCAGTGGAAGAGGTTCAGCCACTGGCTTCTGCTTCTGATGATGGCTCGGATGTAGAAAGTAACAACAAGGGACAACAAGAAGTTGCAGAAGAAGCATATGTTTCTAAAGTTGGCGATGAGGTTCAAAGTTATTCTAGGGAAAGAAGAAGCAAGCGTTCAAAGCGGAAGCGTGCTGTATAA 1383 0.4649 MRSCTVSCTVPLKSFSSMAKTLISSPSFVGTPLPSLPRRHFPHRTRLVATKVHVSFHQIPPIQSINHSIDFAGIATRAEGLLYTLADATVAADPATSTTDAAVQKSGGWFGFISEAMEFVLKVLKDGLSAVHVPYAYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQERYAGNQERIQLETSRLYRQAGVNPLAGCFPTLVTIPVWIGLYQALSNVANEGLLTEGFFWIPSLGGPTTIAARQSGAGISWLFPFVDGHPPLGWQDTAAYLVLPILLVVSQYVSMEIMKPPQTDPSQKNSLLVLKFLPLMIGYFSLSVPSGLTIYWFTNNVLSTAQQVWLRKYGGAKPVVDENAGGIITAGRAKRSASQPAKGGERFKQLKEEEKKKKLSKALPVEEVQPLASASDDGSDVESNNKGQQEVAEEAYVSKVGDEVQSYSRERRSKRSKRKRAV 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2619 460 MobiDBLite consensus disorder prediction 414 429 - -
Ssu3g2619 460 MobiDBLite consensus disorder prediction 377 401 - -
Ssu3g2619 460 PANTHER INNER MEMBRANE PROTEIN ALBINO3, CHLOROPLASTIC 18 454 - -
Ssu3g2619 460 PANTHER OXA1 18 454 IPR001708 GO:0016021|GO:0032977
Ssu3g2619 460 TIGRFAM yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 137 349 IPR028055 -
Ssu3g2619 460 Pfam 60Kd inner membrane protein 137 350 IPR001708 GO:0016021|GO:0032977
Ssu3g2619 460 MobiDBLite consensus disorder prediction 369 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2619 Ssu-Chr3 79711677 79718202 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2619 36 406 Chloroplast and Mitochondria Gene Families AT2G28800 69.437 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2619 K03217 - gmx:100817173 746.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2619 3 79711677 79718202 Ssu3g2619 3 79711677 79718202 ECH