Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2610 ATGTCTGCAGCTCTCGATATGACGCTCGACGACATCATcaagaacaacaaaaaatctGGATCCGGAAACATCCGTGGCCGCGGCCGGTCCACCGGATCCGGGCCCGGACCTTCTCGCCGATTCCCCAACCGTGCCGCCAACCGCACTGCTCCTTATGCTATCGCTAAGGCGCCGGAGGCAACGTGGCAGCACGATTTGTATGCAGATCAGCATGTGGCTGTGTCGGGGTACCCTGCTCAAGGTGGTCGTGCGTCTTCTATAGAAACCGGGACCAAGCTTTATATTTCGAATTTGGATTATGGTGTTTCCAACGATGATATTAAGGAATTGTTTTCTGAAGTTGGTGACCTGAAACGGCATGCGGTTCATTACGACAGGAGTGGTAGATCAAAGGTATCTTATCCTGTATTTTCACGACGAGCTGATGCTGTAGCTGCTGTAAAGAGATACAACGATGTTCAATTAGATGGGAAACCAATGAAGATAGAGATTGTGGGAACAAACATTTCTACACCTGGTGTAGCTCCTGCTGCAAATGGAGCTATTGGAAATTTGAATGGAGTTCCTCGAAGTGGACAAGGAAGAGGTGGGGCATTAAGAAGGCCAGGAGGAAGAGGTCAAGGCATTCGAAGGGATCGAGGACGTGGAAGAGGTCGTGGTGGAGGTCAGGGCGAAAAGTTATCTGCAGAAGATCTTGATGCTGATTTGGAGAAGTATCATTCGGAGGCAATGCAATTGAACTGA 744 0.4852 MSAALDMTLDDIIKNNKKSGSGNIRGRGRSTGSGPGPSRRFPNRAANRTAPYAIAKAPEATWQHDLYADQHVAVSGYPAQGGRASSIETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHAVHYDRSGRSKVSYPVFSRRADAVAAVKRYNDVQLDGKPMKIEIVGTNISTPGVAPAANGAIGNLNGVPRSGQGRGGALRRPGGRGQGIRRDRGRGRGRGGGQGEKLSAEDLDADLEKYHSEAMQLN 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2610 247 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 246 - -
Ssu3g2610 247 SMART rrm1_1 92 163 IPR000504 GO:0003723
Ssu3g2610 247 Gene3D - 77 228 IPR012677 -
Ssu3g2610 247 MobiDBLite consensus disorder prediction 205 240 - -
Ssu3g2610 247 MobiDBLite consensus disorder prediction 185 247 - -
Ssu3g2610 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 160 IPR000504 GO:0003723
Ssu3g2610 247 SMART FoP_duplication_2 175 247 IPR025715 -
Ssu3g2610 247 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 246 - -
Ssu3g2610 247 SUPERFAMILY RNA-binding domain, RBD 25 164 IPR035979 GO:0003676
Ssu3g2610 247 Pfam C-terminal duplication domain of Friend of PRMT1 191 242 IPR025715 -
Ssu3g2610 247 CDD RRM_THOC4 91 164 - -
Ssu3g2610 247 Coils Coil 229 247 - -
Ssu3g2610 247 MobiDBLite consensus disorder prediction 16 46 - -
Ssu3g2610 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 167 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2610 Ssu-Chr3 79597088 79600041 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2610 90 164 Eukaryotic Initiation Factors Gene Family AT2G23350 34.211 1.00e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2610 K12881 - gmx:100775827 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2610 3 79597088 79600041 Ssu3g2610 3 79597088 79600041 ECH