Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2609 ATGTCTGCAGCTCTCGATATGACGCTCGACGACATCATcaagaacaacaaaaaatctGGATCCGGAAACATCCGTGGCCGGGGCCGGTCCACCGGATCCGGGCCCGGACCTTCTCGCCGATTCCCCAACCGTGCCGCCAACCGCACTGCTCCTTATGCTATCGCTAAGGCGCCGGAGGCAACGTGGCAGCACGATTTGTATGCAGATCAGCATGTGGCTGTGTCGGGGTACCCTGCTCAAGGTGGTCGTGCGTCTTCTATAGAAACCGGGACCAAGCTTTATATTTCGAATTTGGATTATGGTGTTTCCAACGATGATATTAAGGAATTGTTTTCTGAAGTTGGTGACCTGAAACGGCATGGGGTTCATTACGACAGGAGTGGCAGATCGAAGGGTACGGCAGAAGTAGTTTTTTCACGACGAGCTGATGCTGTGGCTGCTGTAAAGAGATACAACAATGTTCAATTAGATGGGAAACCAATGAAGATAGAGATTGTGGGAACAAACATTTCTACACCTGGTGTAGCTCCTGCTGCAAATGGAGCTATTGGAAATTTAAATGGAGTTCCTCGAAGTGGACGAGGAAGAGGCGGGGCATTAAGAAGGCCAGGAGGAAGAGGGCAAGGCATTCGAAGGGATCGAGGATGTGGAAGAGGTCGTGGTGGAGGAGGTCGTGGCGAAAGGTTATCTGCAGAAGATCTTGATGCTGATTTGGAGAAGTATCATTCAGAGGCAATGCAATTGAACTGA 750 0.4933 MSAALDMTLDDIIKNNKKSGSGNIRGRGRSTGSGPGPSRRFPNRAANRTAPYAIAKAPEATWQHDLYADQHVAVSGYPAQGGRASSIETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNISTPGVAPAANGAIGNLNGVPRSGRGRGGALRRPGGRGQGIRRDRGCGRGRGGGGRGERLSAEDLDADLEKYHSEAMQLN 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2609 249 Pfam C-terminal duplication domain of Friend of PRMT1 192 244 IPR025715 -
Ssu3g2609 249 SMART FoP_duplication_2 176 249 IPR025715 -
Ssu3g2609 249 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 248 - -
Ssu3g2609 249 SUPERFAMILY RNA-binding domain, RBD 25 165 IPR035979 GO:0003676
Ssu3g2609 249 Gene3D - 77 230 IPR012677 -
Ssu3g2609 249 SMART rrm1_1 92 164 IPR000504 GO:0003723
Ssu3g2609 249 MobiDBLite consensus disorder prediction 187 233 - -
Ssu3g2609 249 CDD RRM_THOC4 91 165 - -
Ssu3g2609 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 168 IPR000504 GO:0003723
Ssu3g2609 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 161 IPR000504 GO:0003723
Ssu3g2609 249 MobiDBLite consensus disorder prediction 206 233 - -
Ssu3g2609 249 MobiDBLite consensus disorder prediction 16 46 - -
Ssu3g2609 249 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2609 Ssu-Chr3 79582551 79587550 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2609 90 165 Eukaryotic Initiation Factors Gene Family AT2G23350 35.526 5.50e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2609 K12881 - gmx:100775827 362.459