Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2608 ATGGTTATGCGTATAACGAGTGCATTAGCGAATGGCAGCGCTCTTCTTTTCCCCTTACCTCGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCGCAGGGCTTTCCTACGATACCAATGAACCGGTTCTGAGAGACGCCTTTGGCCAACACGGTGAAATCATTGAAGCTAAAGTAATATGTGATCACGTGACTGGGAAATCAAGAGGGTATGGATTTGTGCGGTTCGTTTCTGAAACTACAGCCGCTACAGCCCGCAAAGAAATGCACGGCCAGATACTGGATGGCAGACGCATTCGGGTGAGTTATGCGCACAAGGGGTAG 333 0.4805 MVMRITSALANGSALLFPLPRFLCVRHHSSTKLFVAGLSYDTNEPVLRDAFGQHGEIIEAKVICDHVTGKSRGYGFVRFVSETTAATARKEMHGQILDGRRIRVSYAHKG 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2608 110 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 103 IPR000504 GO:0003723
Ssu3g2608 110 PANTHER GLYCINE-RICH RNA-BINDING-LIKE PROTEIN-RELATED 4 109 - -
Ssu3g2608 110 Gene3D - 23 110 IPR012677 -
Ssu3g2608 110 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 4 109 - -
Ssu3g2608 110 SMART rrm1_1 32 105 IPR000504 GO:0003723
Ssu3g2608 110 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 109 IPR000504 GO:0003723
Ssu3g2608 110 SUPERFAMILY RNA-binding domain, RBD 28 109 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2608 Ssu-Chr3 79562065 79562777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2608 30 109 Eukaryotic Initiation Factors Gene Family AT4G34110 40.000 2.08e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2608 K13195 - gmx:100306540 204.527