Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2604 atgtCTTTGCAAAACAAGGGATTTTGGATGGTAAAGGGTTCCGGCCACATTAGTGACAGAGAGACAGTATTTGATAATCCTTCCAAAATTGAACCAAAACGACCTCATCAATGGTTTGTTGACGCTGCTGAAGTAGATTTTTTTCCAAACAAGAAACAAGCTGTAGAAGATGCAAATGAAAAATCTAGTCCTGGATTTTCAAATGTAAATATTCCTTCCTGGGAGAACACTCCCAATTTTCTTTCAGTCCCAAACCAATTTATTGGCCGGTTATTTGGGTCTGAAACTAGACCTGTCAATTTCACTGAAAAGAATACTTCTTATGTTCTGGCCGATGATTCTAATGTGAGATCAAAAATGATCACCAATCAATATGGAGATGACGCATCTTTTGGCTTGTCTATATCTCATTCTATTGAAGATTCTGAAGCATGTGTAAATTTTGGTggaataaaaaaagtcaaagtAAATCAGGTTAAGGAAGATGATGTACAGGCTCTGGAGGGACATAATTTTAGTAGGCAGTGTAATGGTGACCTACATCGGGCCTATAACAGGGAAGTTGGGACAAGGTCTACATCAATAGGGCAAGCCTTTGACAAGGATGGTAATGCCACTTCAATGGGATTCACCTACAGCAGAGGGGATGCACATGTCAGATCATTTAGTGCCCCCTTTGTCAAAGGAGAAGAGTCAATCGTATCAATTAGTGAATCCTATAATAAAGAGGacacaaatataatttcttttggtGGGTTCCCAGATGAACGGGATATTATCTCTGTGGGTAGGCCTGCTGCAGAGTATGATCAATTATATAATCAATCTTCAGCTCATGTGTCAACAACAGCCCATGAGAAAGAGTTGGATGTGTCAAGTTCTGATGCAGTCGCAAGTACTTTTCAGGTAGCAAAAGTCAAGTCTGAAACTGTGTCCAAGCATAAACAAGAGTTCAAAACAGCAAGGAAAGAAGCTCCAAACAGCTTCCCTTCTAATGTCAGGAGCTTGATATCTACTGGTATGCTTGATGGTGTTCCTGTAAAGTATATCTCAGTGGCACGGGAGGAACTGCATGGAATTATAAAAGGCTCTGGCTATCTTTGTGGGTGTCAATCATGTAACTATACCAAGGTTCTGAATGCTTACGAGTTTGAGAGACATGCTGGCTGCAAGACAAAACATCCAAACAATCACATTTATTTTGACAATGGGAAGACTATATATCAAATAGTACAGGAATTGAGGAGTACCCCCGAAAGTTTGTTGTTTGATACAATTCAAACAGTTTTTGGTGCACCAATTAATCAGAAAGCATTTCGCAATTGGAAAGAATCATTTCAAGCAGCAACACGGGAGCTTCAACGCATTTATGGAAAGGAAGAACTTAACCTATAA 1395 0.3857 MSLQNKGFWMVKGSGHISDRETVFDNPSKIEPKRPHQWFVDAAEVDFFPNKKQAVEDANEKSSPGFSNVNIPSWENTPNFLSVPNQFIGRLFGSETRPVNFTEKNTSYVLADDSNVRSKMITNQYGDDASFGLSISHSIEDSEACVNFGGIKKVKVNQVKEDDVQALEGHNFSRQCNGDLHRAYNREVGTRSTSIGQAFDKDGNATSMGFTYSRGDAHVRSFSAPFVKGEESIVSISESYNKEDTNIISFGGFPDERDIISVGRPAAEYDQLYNQSSAHVSTTAHEKELDVSSSDAVASTFQVAKVKSETVSKHKQEFKTARKEAPNSFPSNVRSLISTGMLDGVPVKYISVAREELHGIIKGSGYLCGCQSCNYTKVLNAYEFERHAGCKTKHPNNHIYFDNGKTIYQIVQELRSTPESLLFDTIQTVFGAPINQKAFRNWKESFQAATRELQRIYGKEELNL 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2604 464 PANTHER AUTOIMMUNE REGULATOR 1 464 - -
Ssu3g2604 464 PANTHER DNA-BINDING PROTEIN 1 464 - -
Ssu3g2604 464 Pfam Tify domain binding domain 359 414 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2604 Ssu-Chr3 79512535 79515756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2604 319 447 PHD Transcription Factor Family AT3G53680 53.077 2.53e-40 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2604 - - gmx:100819317 872.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2604 3 79512535 79515756 Ssu3g2604 3 79512535 79515756 ECH