Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2603 ATGAAGAGAGGCAGAGACAATGAGGGCGAGGTAGACATGGCTAATTGTTTGATGTTACTAGCCAAAGTTGGCGAAGGCCCATCAAGAGAGATGGTTTTAAAGGGTGGTGATTTTAAGTGCAAGACTTGTAACAGACAATTCCATTCGTTTCAAGCCCTTGGGGGCCACCGAGCCAGCCACAAGAAGCTAAAGCTCATGGCCTCAAACCTTTCGTGCTCGACCATGACACCAAAGATGCACCGGTGTCCGATTTGTGGGCTCGAGTTTGAGATTGGACAAGCGCTGGGAGGGCACATGAGAAAACATAGAGCTGCCTTAAACGATGGTTTGCCAATTCGTGATCGTGTTGTGCCTAAATCTAATGGAACTAAAAGGCTTCGTTTGTGCTTGGACTTGAACTTGACACCGTACGAGAATGATCAGAGCCTCAATTTAAGGACACCtgttttaaatttgttcatTTGA 465 0.4538 MKRGRDNEGEVDMANCLMLLAKVGEGPSREMVLKGGDFKCKTCNRQFHSFQALGGHRASHKKLKLMASNLSCSTMTPKMHRCPICGLEFEIGQALGGHMRKHRAALNDGLPIRDRVVPKSNGTKRLRLCLDLNLTPYENDQSLNLRTPVLNLFI 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2603 154 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Ssu3g2603 154 Gene3D Classic Zinc Finger 36 102 - -
Ssu3g2603 154 SMART c2h2final6 80 102 IPR013087 -
Ssu3g2603 154 SMART c2h2final6 38 60 IPR013087 -
Ssu3g2603 154 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Ssu3g2603 154 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Ssu3g2603 154 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 152 - -
Ssu3g2603 154 PANTHER ZINC FINGER PROTEIN ZAT5 1 152 - -
Ssu3g2603 154 SUPERFAMILY beta-beta-alpha zinc fingers 38 102 IPR036236 -
Ssu3g2603 154 Pfam C2H2-type zinc finger 38 62 - -
Ssu3g2603 154 Pfam C2H2-type zinc finger 80 104 - -
Ssu3g2603 154 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 102 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2603 Ssu-Chr3 79496701 79497165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2603 1 140 C2H2 Transcription Factor Family AT2G28710 49.007 5.08e-34 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu3g2603 zf-C2H2_6 2.7e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2603 - - gmx:112998408 248.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0486 8 7609645 7610148 Ssu3g2603 3 79496701 79497165 PCT