Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2602 ATGACTAACTGTAGAATTCAGAGTGGAGCGGTTACACCCAATGAATCACATCACACTCATCGTTTGCACCTTCCTCCCTTAGCTACTTTCCCTTTCTCTCATTCAAATTCAACAACTCCGCCAACAGCACATAATCCAATAAGCCCTGGATCACGTTGGAGAAAAGGAAAGCTGCTTGACAGAGGCACATTTGGAGATATCTATCTTGGCTTTAATAAGGAAAGTGGTGAAATGAGTGCTATGAAAGAGGTAACTCTCTTTTCATATGATGCCAAATCTAGAGAAAGTGCTATGCAATTAATGCGGGTAAATTTATTTccCAATTACAGTATCCCAAACATTGTGCAGTATTATGGTTCTGAAACAGTAAGCGACAAGCTTTGCATATATCTAGAGTATGTCGGTGGAGGCTCTATATATAAACAACTTCAACAAtatggagaatttggtgaactAGCTATTCGTAGTTTTACTCAACAAATTTTGGAAATCAAAGGAGCAATTATACTGGTAGATAGTAATGGCCAGGTTAAGTTGGCAGACTTTGGCATGGCAAAGCATATAACAGGGCAATCATGTCCATTATCTTTCAAGGGAAGCCCCTGTTGGATGGCTCCTGAGGTTGTTACAAAAAACCCTAATGATTGCAACCTTGCTGTTGATATATGGAGCCTTGGATGCACAGTTTTGGAAATGGCTACAACTAAACCTCCTTGGAGTAACTATGAAGGGGTTGGTAATTCATGTCAATATATTGGAACTTGtagttag 771 0.3813 MTNCRIQSGAVTPNESHHTHRLHLPPLATFPFSHSNSTTPPTAHNPISPGSRWRKGKLLDRGTFGDIYLGFNKESGEMSAMKEVTLFSYDAKSRESAMQLMRVNLFPNYSIPNIVQYYGSETVSDKLCIYLEYVGGGSIYKQLQQYGEFGELAIRSFTQQILEIKGAIILVDSNGQVKLADFGMAKHITGQSCPLSFKGSPCWMAPEVVTKNPNDCNLAVDIWSLGCTVLEMATTKPPWSNYEGVGNSCQYIGTCS 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2602 256 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 15 246 - -
Ssu3g2602 256 Gene3D Transferase(Phosphotransferase) domain 1 51 252 - -
Ssu3g2602 256 MobiDBLite consensus disorder prediction 30 53 - -
Ssu3g2602 256 SUPERFAMILY Protein kinase-like (PK-like) 30 243 IPR011009 -
Ssu3g2602 256 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 15 246 - -
Ssu3g2602 256 MobiDBLite consensus disorder prediction 30 46 - -
Ssu3g2602 256 ProSiteProfiles Protein kinase domain profile. 53 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2602 256 Pfam Protein kinase domain 55 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2602 Ssu-Chr3 79490756 79492906 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2602 5 245 MAP Kinase Kinase Kinase AT1G63700 60.702 3.09e-100 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Ssu3g2602 Pkinase 3.3e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2602 K20717 - gmx:100819762 356.295