Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2601 ATGTTCATGCTTGGTAATACCGAGGAACTCCCAACAACCCCAGATCATCTCTCTAGTGAAGGAAAGGAATTTGTTAGGAAATGCCTACAACGTAATCCACACAATCGCCCTTCAGCCAGTGAATTATTGGACCACCCTTTTGTAAAATGTGCTGCACCTTTAGAAAGACCTAATATGGCTAATTAG 186 0.4194 MFMLGNTEELPTTPDHLSSEGKEFVRKCLQRNPHNRPSASELLDHPFVKCAAPLERPNMAN 61
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2601 61 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 60 - -
Ssu3g2601 61 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 60 - -
Ssu3g2601 61 Gene3D Transferase(Phosphotransferase) domain 1 1 60 - -
Ssu3g2601 61 SUPERFAMILY Protein kinase-like (PK-like) 5 51 IPR011009 -
Ssu3g2601 61 ProSiteProfiles Protein kinase domain profile. 1 48 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2601 61 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2601 Ssu-Chr3 79490442 79490627 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2601 1 57 MAP Kinase Kinase Kinase AT1G63700 68.421 6.42e-24 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Ssu3g2601 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2601 K20717 - gmx:100792783 114.39