Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2599 ATGATTCAACAAGAAATCCGAAGGGGTCCCTGGACAGAACAAGAGGActacaaattgttgtattttGTTAACATGTTTGGAGATCGTAGATGGGACTTTATAGCTAAGGTATCAGGTTTGAATAGAACAGGTAAGAGTTGCAGGTTACGGTGGGTTAATTACCTGCACCCTGATCTCAAACGAGGGAAGCTGACACCCCAAGAGGAGCACCTCGTGATGGAGCTTCATTCCAAATGGGGAAATAGATGGTCAAGAATTGCTCGCAAGTTACCAGGGCGCACGGACAATGAGATTAAGAATTATTGGAGGACTCACATGAGGAAGAAGAAGGCTCAAGAGAAAAAGCGTGCAGAAGCTGCAGCATCATCACCTGTGTCTTCTAGTTGTCAGTCTTCACTATCCTCAAACAACCATGTTGTGGATTCACATGCTTCCAAAGAGGCCGGAGAAGAAAGCTTTTATGACACAGGTGGATATGATGACATGATGGGTTTAATTGGAATTAACGTTGGAAAAGATCTCCAAGGTGGTGAAAAGGGGTACCCTATGGATGATATATGGAAAGATATTGTTGTGTCAGAAGAGAACATTTATAATCTACAACCTGTCTATGAAGGCATAGTGAAGAGGGATGCAACTTCTCTTGTCCACCTGCAATGCCTTCTCCGTCATGGGAGTACAATTCTTCTCTATGGGTGA 699 0.4278 MIQQEIRRGPWTEQEDYKLLYFVNMFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPDLKRGKLTPQEEHLVMELHSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKKAQEKKRAEAAASSPVSSSCQSSLSSNNHVVDSHASKEAGEESFYDTGGYDDMMGLIGINVGKDLQGGEKGYPMDDIWKDIVVSEENIYNLQPVYEGIVKRDATSLVHLQCLLRHGSTILLYG 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2599 232 Gene3D - 8 60 - -
Ssu3g2599 232 Gene3D - 64 107 - -
Ssu3g2599 232 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Ssu3g2599 232 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 203 IPR044676 GO:0003700|GO:0006355|GO:0043565
Ssu3g2599 232 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Ssu3g2599 232 PANTHER TRANSCRIPTION FACTOR MYB48-RELATED 3 203 - -
Ssu3g2599 232 CDD SANT 65 106 IPR001005 -
Ssu3g2599 232 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Ssu3g2599 232 Pfam Myb-like DNA-binding domain 61 105 IPR001005 -
Ssu3g2599 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Ssu3g2599 232 SUPERFAMILY Homeodomain-like 5 102 IPR009057 -
Ssu3g2599 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Ssu3g2599 232 CDD SANT 10 55 IPR001005 -
Ssu3g2599 232 MobiDBLite consensus disorder prediction 112 147 - -
Ssu3g2599 232 MobiDBLite consensus disorder prediction 121 142 - -
Ssu3g2599 232 SMART sant 7 57 IPR001005 -
Ssu3g2599 232 SMART sant 60 108 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2599 Ssu-Chr3 79427888 79428867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2599 1 203 MYB Transcription Factor Family AT5G59780 59.314 3.78e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu3g2599 Myb_DNA-binding 4.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2599 K09422 - gmx:100776886 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2599 3 79427888 79428867 Ssu3g2599 3 79427888 79428867 ECH
Ssu3g2599 3 79427888 79428867 Ssu8g0489 8 7694821 7695950 PCT