Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2597 ATGCCTATGTCTAGAATTTCCATTGGAAATCCTTCGGAGTTGGGCCAAGCTGATGCGCTCAAGGCTGCTCTGGCTGAGTTCATCTCAATGCTAATATTTGTCTTTGCAGGAGAAGGCTCTGGCATGGCAtataACAAACTCACAAACAATGGTGCAGCAACACCAGCTGGGGTGGTGGCAGCATCACTGTCTCATGCATTTGCCCTTTTTGTTGCGGTCTCTGTTGGTGCTAACATCTCAGGTGGGCATGTTAACCCTGCTGTCACATTTGGTGCCTTTATTGGTGGCCACATAACCCTCCTCAGAGGCATTTTGTACTGGATTGCTCAGTTGCTTGGCTCTGTAGTGGCTTGCTTGCTCCTTAAATTTGCCACTGGTGGATTGGAAACATCTGCGTTCTCATTATCTTCTGGGGTGGGAGCGGCAAACGCACTTGTCTTTGAGATTGTGATGACTTTTGGTTTGGTTTACACAGTATATGCCACTGCAGTGGACCCAAAGAAGGGTAACCTTGGGATAATTGCTCCAATTGCAATTGGTTTCATTGTGGGTGCCAACATATTGGCAGGTGGTGCCTTTGACGGTGCATCCATGAACCCAGCAGTTTCTTTTGGACCTGCTGTTGTTAGCGGGACATGGGCTAACCACTGGGTCTACTGGGCTGGCCCATTAATTGGCTCCGCTATTGCTGCTGTTGTGTACGAGATTTTCTTCATCACCCCAAGCTCTTATGAACAGCTACCCGTCACAGATTATTAG 759 0.4809 MPMSRISIGNPSELGQADALKAALAEFISMLIFVFAGEGSGMAYNKLTNNGAATPAGVVAASLSHAFALFVAVSVGANISGGHVNPAVTFGAFIGGHITLLRGILYWIAQLLGSVVACLLLKFATGGLETSAFSLSSGVGAANALVFEIVMTFGLVYTVYATAVDPKKGNLGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSGTWANHWVYWAGPLIGSAIAAVVYEIFFITPSSYEQLPVTDY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2597 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g2597 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g2597 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g2597 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g2597 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g2597 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g2597 252 PANTHER MAJOR INTRINSIC PROTEIN-RELATED 1 252 - -
Ssu3g2597 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g2597 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Ssu3g2597 252 PANTHER AQUAPORIN-8 1 252 IPR034294 -
Ssu3g2597 252 SUPERFAMILY Aquaporin-like 18 243 IPR023271 -
Ssu3g2597 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Ssu3g2597 252 Pfam Major intrinsic protein 16 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2597 Ssu-Chr3 79418751 79419849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2597 1 252 Major Intrinsic Protein MIP AT2G36830 78.968 1.49e-140 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2597 K09873 - gmx:100777419 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2597 3 79418751 79419849 Ssu3g2597 3 79418751 79419849 ECH
Ssu8g0490 8 7699290 7700381 Ssu3g2597 3 79418751 79419849 ECH
Ssu8g0490 8 7699290 7700381 Ssu3g2597 3 79418751 79419849 PCT