Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2594 ATGTCTTCTGATTCTGCGAAATCTAATGTCCCTTCACATTGGAAACTGGAAGAAGTTCTTCCAATTATTATAGTGTGTGTTATCTTTCTCACACTGAGTGATTGCTTCGGCATATCTAAGCGTTTCTTGTGCGGAATTTGCCGTGGTAGAAACCAGGCTCAAAGACGACTTCTAGATGGGTCCATTCCCGATGACCCTTCTCAGCAGCTTCAAAGCCGTGGATTGGAGTTTTCCGAGGTGCAGTCTCTTCCCACGTTTCAGTTCGAGAAAAGTGAGGTACAACAACACAAGGCAATTAACGTGGACTGTGCCATTTGCCTTGGAGAGTTTGAGGAAGGGGAGTGGTTGAAACATCTTCCAAACTGCAGCCACAGCTTCCATGTTTCATGCATTGACACGTGGTTTCAGTCTCATTCAAATTGCCCTCTTTGTAGATCCTTTGTCCATCATCACATCCTACAGTGTTCCGTAGCTTCTCACACACTGATACAACCTTTGAGGAGGGAAGACTTTTTCCAAGAAAGGGTTCTATCCATTCTCTCTGAAAATCTGCTTATTAGGCAACAACCGTCCACTCCCTCTTGA 585 0.4479 MSSDSAKSNVPSHWKLEEVLPIIIVCVIFLTLSDCFGISKRFLCGICRGRNQAQRRLLDGSIPDDPSQQLQSRGLEFSEVQSLPTFQFEKSEVQQHKAINVDCAICLGEFEEGEWLKHLPNCSHSFHVSCIDTWFQSHSNCPLCRSFVHHHILQCSVASHTLIQPLRREDFFQERVLSILSENLLIRQQPSTPS 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2594 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 150 IPR013083 -
Ssu3g2594 194 SUPERFAMILY RING/U-box 83 151 - -
Ssu3g2594 194 SMART ring_2 103 144 IPR001841 -
Ssu3g2594 194 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 20 149 IPR044675 -
Ssu3g2594 194 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 20 149 - -
Ssu3g2594 194 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Ssu3g2594 194 Pfam Ring finger domain 102 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2594 Ssu-Chr3 79350622 79351206 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2594 65 149 Rapid Response to Elicitors AT3G16720 51.685 2.10e-23 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2594 - - gmx:121172630 295.434