Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2593 ATGGCTCCGTCCAAAGTTGATAGTTCTAAGAAGAGTGATTCAAAGGCACAGGCCTTGAAAACTGCTAAGGCAGTTAAGTCTGGCCCTGCCTTTAAGAAGAAGGCCAAGAAGATCCGAACTTCTGTCACTTTCCACAGGCCGAAGACACTGAAGAAGGATAGGAACCCCAAGTACCCTCGCATTAGTGCCCCCCCGAGGAACAAGCTTGACCATTATCAGATTCTGAAGTACCCTCTCACCACTGAATCTGCTATGAAGAAGATTGAGGACAACAACACTTTGGTTTTCATTGTTGACCTGCGCGCCGACAAGAAGAAGATCAAGGATGCGGTGAAGAAAATGTATGACATTCAGGCCAAGAAAGTTAACACCTTGATCAGGCCTGATGGCACCAAGAAGGCCTATGTCAGGTTGACCCCTGATTATGATGCATTGGATGTTGCAAACAAGATCGGGATTATCTAA 465 0.4624 MAPSKVDSSKKSDSKAQALKTAKAVKSGPAFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2593 154 MobiDBLite consensus disorder prediction 27 45 - -
Ssu3g2593 154 Pfam Ribosomal protein L23, N-terminal domain 15 64 IPR005633 -
Ssu3g2593 154 Pfam Ribosomal protein L23 74 136 IPR013025 GO:0003735|GO:0005840|GO:0006412
Ssu3g2593 154 Gene3D - 35 154 IPR012677 -
Ssu3g2593 154 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 1 154 - -
Ssu3g2593 154 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 71 147 IPR012678 GO:0003735|GO:0005840|GO:0006412
Ssu3g2593 154 Hamap 50S ribosomal protein L23 [rplW]. 74 154 IPR013025 GO:0003735|GO:0005840|GO:0006412
Ssu3g2593 154 ProSitePatterns Ribosomal protein L23 signature. 132 147 IPR001014 -
Ssu3g2593 154 PANTHER 60S RIBOSOMAL PROTEIN L23A 1 154 IPR013025 GO:0003735|GO:0005840|GO:0006412
Ssu3g2593 154 MobiDBLite consensus disorder prediction 1 65 - -
Ssu3g2593 154 TIGRFAM uL23_arch: ribosomal protein uL23 78 154 IPR019985 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2593 Ssu-Chr3 79347721 79348954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2593 1 154 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 87.662 4.95e-72 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2593 K02893 - jre:109021970 267.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2593 3 79347721 79348954 Ssu3g2593 3 79347721 79348954 ECH
Ssu8g0492 8 7741305 7742429 Ssu3g2593 3 79347721 79348954 ECH
Ssu8g0492 8 7741305 7742429 Ssu3g2593 3 79347721 79348954 PCT