Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2582 ATGgcgAGAATCAAGGTTTACGAGCTGAGGAGCAAGACGAAGGCAGAGCTTCTGATCCAATTGAAGGATTTGAAGGCCGAACTTGCGCTCCTCCGTGTCGCTAAGGTCACTGGCGGAGCACCAAACAAGCTCTCAAAGATAAAAGTGGTTCGGCTTTCTATAGCGCAGGTGCTGACGGTGATTTCCCAGAAGCAAAAAGCAGCGTTGAGGGAAGCTTACAAGCAGAAGAAGTACCTGCCTTTGGATCTGCGTTCAAAGAAAACCAGAGCCATCAGAAGACGCCTCACCAAGCACCAGAAATCTTTGAAGACACAGCGTGAGAAGAAGGAAATGTACTTCCCAATTAGAAAATATGCATTAAAGGTGTAA 369 0.4634 MARIKVYELRSKTKAELLIQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKQKKYLPLDLRSKKTRAIRRRLTKHQKSLKTQREKKEMYFPIRKYALKV 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2582 122 SUPERFAMILY Ribosomal protein L29 (L29p) 4 65 IPR036049 GO:0003735|GO:0005840|GO:0006412
Ssu3g2582 122 TIGRFAM L29: ribosomal protein uL29 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Ssu3g2582 122 Gene3D - 1 77 IPR036049 GO:0003735|GO:0005840|GO:0006412
Ssu3g2582 122 Gene3D - 78 122 - -
Ssu3g2582 122 PANTHER 60S RIBOSOMAL PROTEIN L35-LIKE 1 122 - -
Ssu3g2582 122 Hamap 50S ribosomal protein L29 [rpmC]. 4 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Ssu3g2582 122 Coils Coil 14 34 - -
Ssu3g2582 122 Pfam Ribosomal L29 protein 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Ssu3g2582 122 PANTHER 60S RIBOSOMAL PROTEIN L35 1 122 IPR045059 GO:0000463|GO:0022625
Ssu3g2582 122 CDD Ribosomal_L29_HIP 8 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2582 Ssu-Chr3 79221765 79224162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2582 1 122 Cytoplasmic Ribosomal Protein Gene Family AT2G39390 86.179 1.30e-67 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2582 K02918 - gmx:100789845 211.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2582 3 79221765 79224162 Ssu3g2582 3 79221765 79224162 ECH