Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2578 ATGCCAAGAAAAGGAATGAGAAGCATTTTCTTCAAACCATCACCTCCTCCGCCCACGTCATCCCTACCACCTCCCTCCCCTCTCCGCACTTTCTCCGACTCCTTAATGGAAGAAAACATACAAACCGCAGAGTCGCTCATAACTAAATGGGATGATTCCGCCGCCAATTACCAATCCAAATTCCCCATCCCTCTTTTCAGCGGCACGCGCCAGGAAGCCAAACAGTACCTAAACGCGGTCAAGGGTCTACAATCCGCTATGCAGCACCTCGTCGCACAGGATTCCTCCTCCAGCACCCTTGTGCGTGCTCAGTTCCTAATGCAACTCGCCATGAAGACGCTCCAGAAAGAGTTCTATCAGATTCTATCCTCCAACAGAGACCGCCTGGATCCCGAAACCGTCTCCACGCGCTCCTCCGTCGACCACCGAAGCAGCGTCTCCGATTACGTCTCCGATTACGACGACGAAATCTCAATCTCCGAGGACGAGTTCTGCGTCTCCGAGACCGAGCGAGTTTCCATGCTCGCCATGGAGGATCTGAAATCCATCGCGGAGAGCATGATATCCGCCGGCTACGGCAAAGAGTGCGTCAAGGTTTACATCATCATGAGAAAATCGATCGTCGACGAAGCTCTGTACCACGTCGGAGTTGAACGGTTGAGCTTCTCTCAGGTTCAGAAACTGGACTGGGAGGTCCTCGAGTTGAAGATCAAGAGCTGGCTAAACGCCGTGAAAGTCGCCATCGGAACTCTGTTCCACGGCGAGAGGATTCTCTGCGACCACGTTTTCAGCGCGGATTCGGGAAAGAGAATCGCGGAATCGTGTTTCGCCGAAATCACCAAAGACGGCGCCGTGTCGCTGTTCGGATTCCCGGAAATGGTGGCGAAGTGCAAGAAAACGCCGGAAAAAATGTTCAGGGCTTTGGATTTGTACGAAGCGATCTCCGACCACTGGCCGCAAATCGAATCCATATTCTCCTTCGAATCCACATCAAACATTCGCTCACAGGCCGTTACGTCGATGGTGAAACTCGGCGACGCCGTTACAACGATGCTAACGGACTTCGAAACCGCGATTCAGAAGGAATCCTCGAAGAAACCGGTCCCTGGCGGTGGAGTCCACCCTCTCACGCGCTACGTGATGAACTACCTGACGTTCCTCGCCGATTACAGCGGCGTGTTGGTCGATATAATCGCCGATTTGCCGCAATCGCCGTTGCCGGAGTCTTACTATCGAAGCCCGATGCGCGGGGAAAACGCGTCGGGCTCGGAGTTATCCGAGCGAATCGCGTGGCTCATACTCGTCGTGCTGTGCAAGCTCGACGGCCAAGCGGAACTCTACAAGGACGTCGCGCTTTCGTACCTGTTCCTCGCGAATAACATGCAATACGTCGTCGTAAAGGTGCGCAAATCGAACCTAGGGTTCCTTCTCGGCGAGGAGTGGTTGGCGAAGCACGAGTTGAAGGTTAGAGAGTACGCGTCCAAGTACGAGCGCGTCGGGTGGAGCGCGGTGTTCTCGTCGCTGCCGGAAAACACCGCGGCGGAGGTGCCGGCGGAGCAGGCCAGGGCCTGCTTCGTGAGGTTCGACGCTGCGTTTCGTGAAGCGTGTAGAAAACAGTCCTCGTGGGTCGTATCCGACCCGAAATTGCGGGACGAAATCACAGCCTCGATAGCTTCGAAGCTGGTGGCTAAGTACGGTGAATTCTACGAGACGAATCGGGTCGGGTCGAAGTCCGTTACACCCGATGATATTGGGAATTACCTGTCTGACATTTTGTATGGGAACGGGATTGGGGATTCGGGTAGTGTCTCGTCACATTCTTCGTCAACGACGTCGTCTTCTCATCGCTCTAATCGACGGTGA 1863 0.5464 MPRKGMRSIFFKPSPPPPTSSLPPPSPLRTFSDSLMEENIQTAESLITKWDDSAANYQSKFPIPLFSGTRQEAKQYLNAVKGLQSAMQHLVAQDSSSSTLVRAQFLMQLAMKTLQKEFYQILSSNRDRLDPETVSTRSSVDHRSSVSDYVSDYDDEISISEDEFCVSETERVSMLAMEDLKSIAESMISAGYGKECVKVYIIMRKSIVDEALYHVGVERLSFSQVQKLDWEVLELKIKSWLNAVKVAIGTLFHGERILCDHVFSADSGKRIAESCFAEITKDGAVSLFGFPEMVAKCKKTPEKMFRALDLYEAISDHWPQIESIFSFESTSNIRSQAVTSMVKLGDAVTTMLTDFETAIQKESSKKPVPGGGVHPLTRYVMNYLTFLADYSGVLVDIIADLPQSPLPESYYRSPMRGENASGSELSERIAWLILVVLCKLDGQAELYKDVALSYLFLANNMQYVVVKVRKSNLGFLLGEEWLAKHELKVREYASKYERVGWSAVFSSLPENTAAEVPAEQARACFVRFDAAFREACRKQSSWVVSDPKLRDEITASIASKLVAKYGEFYETNRVGSKSVTPDDIGNYLSDILYGNGIGDSGSVSSHSSSTTSSSHRSNRR 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2578 620 SUPERFAMILY Cullin repeat-like 42 591 IPR016159 -
Ssu3g2578 620 Gene3D Exocyst complex component Exo70 56 597 - -
Ssu3g2578 620 MobiDBLite consensus disorder prediction 11 25 - -
Ssu3g2578 620 MobiDBLite consensus disorder prediction 600 620 - -
Ssu3g2578 620 MobiDBLite consensus disorder prediction 1 31 - -
Ssu3g2578 620 PANTHER EXOCYST COMPLEX PROTEIN EXO70 10 598 IPR004140 GO:0000145|GO:0006887
Ssu3g2578 620 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 10 598 - -
Ssu3g2578 620 Pfam Exo70 exocyst complex subunit 238 590 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2578 Ssu-Chr3 78840467 78842329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2578 10 595 EXO70 exocyst subunit family AT5G59730 48.856 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2578 K07195 - gmx:100810579 950.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2578 3 78840467 78842329 Ssu3g2578 3 78840467 78842329 ECH