Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2571 ATGTGGGATTTTAGAGAAGTTGGCTTATttgtctgtgccttatcaaTCTTGCCCTTGGTATGTTTTTCTGCCAACTTTGTTCCTCTAGATAATTACCTTATAGACTGTGGAGCACCGGCAAATACTTCAATAGATAGCCGCAATTTCACAGCGGATAGTTTCTATAAGAAATTCCTTTCCACTCAACAAGATATTCTTGCCAGTACATCCTTGAAATCAATCACTTCCTCCAGTGATTCGCCTCTCTATCAAACCGCAAGGATTTTCACTGCGGCCTCAAAGTACACGTTTCCTGTTAACCAAAAGGGGAGACATTGGATCcgtctttatttctttccatttgCATATGAAAAGTACAATTTGAGTTCTGCAAATTTTGCTGTTTCCACCCAGAACTATAATCTTCTCAGTGACTTTAGTGTGCAGAAAAATCCTGTTATGAAGGAGTACTCTCTAAATGTGACCTCAGACACCCTTGTGATCACCTTTGCCCCTTCCACCAATTCCATCGCTTTCGTGAATGCGATTGAAGTTGTTTCGGTCCCTGATGACCTCATTATTGATGATGCTTACACCCTAAATCCAGCAGCAAGCTACTCTGGCTTGTTGACGCAGGCACTGGAGACGGTTTTCAGGGTTAACATGGGTGGTCCAACTGTCTCCTCTGGCAGTGACACGCTTCAACGAACTTGGGTTCCTGATCAAAAATTCCTCATACAACCTAACCTGGCCAGTAATTTTTCAAATGTAGGTGCTGTGAAATATGTAAATGGCGGGCCAACAGAAAATACTGCTCCTTCGTCTGTCTATGGTACTCTAACACAGATGAATTCAGCTGGTGATCCCCGGAGTAATTTCAATGTGACTTGGCAGTTTGATGTGGAGCCTCAATTTCAGTACCTTATTCGACTTCACTTCTGTGACATAGTCAGCAAAGGTCTCAATGAACTCTACTTCAATGTTTACATTAACTCCTGGTTTGCTGCTAAGGACCTTGATCTCAGTAcgataaataataatgttttggCTACTCCATTTTTTAAGGATTTGGTTACAGCCCCATCTGCCAACAATAAAATTGTTGTAAGCATTGGCCCTTCTCCTCTGAATAGTGATTATCCTAACGCTATTTTGAATGGGCTGGAGATCATGAAAATGAACAACTCTGTGAGAAGTCTCAGCTCATCAACAGCTGTGCCTGGGACTAGTGCTTCTGGTTCAAGTTCTAAGAAGGTTGGCTTGATAGTGGGTGTGAGTCTTGGGGCATTTCTTGCGGTGGTCATGGTTGGAGTTTTCTTTTTACTGTGTAGGAAAAGAAGACGTTTGGAAAGACAAGGGCATTCGAAGACATGGACTCCCTTATCAATCAATGACGGAACTTCTCACACCATGGGAAGTAAATATTCTAATGGAACAACAGCAAGTGCTGCCTCAAACTTTGGGTATCGCATCCCTTTTGTGGCGGTTCAGGAGGCTACAAATAATTTTGACGAGAGTTGGGTTATTGGCATTGGTGGTTTTGGTAAAGTATACAAGGGAGAATTAAATGACTGGTACTAA 1560 0.409 MWDFREVGLFVCALSILPLVCFSANFVPLDNYLIDCGAPANTSIDSRNFTADSFYKKFLSTQQDILASTSLKSITSSSDSPLYQTARIFTAASKYTFPVNQKGRHWIRLYFFPFAYEKYNLSSANFAVSTQNYNLLSDFSVQKNPVMKEYSLNVTSDTLVITFAPSTNSIAFVNAIEVVSVPDDLIIDDAYTLNPAASYSGLLTQALETVFRVNMGGPTVSSGSDTLQRTWVPDQKFLIQPNLASNFSNVGAVKYVNGGPTENTAPSSVYGTLTQMNSAGDPRSNFNVTWQFDVEPQFQYLIRLHFCDIVSKGLNELYFNVYINSWFAAKDLDLSTINNNVLATPFFKDLVTAPSANNKIVVSIGPSPLNSDYPNAILNGLEIMKMNNSVRSLSSSTAVPGTSASGSSSKKVGLIVGVSLGAFLAVVMVGVFFLLCRKRRRLERQGHSKTWTPLSINDGTSHTMGSKYSNGTTASAASNFGYRIPFVAVQEATNNFDESWVIGIGGFGKVYKGELNDWY 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2571 519 Gene3D Phosphorylase Kinase; domain 1 474 518 - -
Ssu3g2571 519 Gene3D - 205 388 - -
Ssu3g2571 519 Gene3D - 31 182 - -
Ssu3g2571 519 Pfam Malectin-like domain 34 386 IPR024788 -
Ssu3g2571 519 PANTHER RECEPTOR-LIKE PROTEIN KINASE HERK 1 17 517 - -
Ssu3g2571 519 PANTHER OS07G0166700 PROTEIN 17 517 IPR045272 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2571 Ssu-Chr3 78689781 78691340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2571 10 517 Receptor kinase-like Gene Family AT3G46290 55.294 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2571 - - gmx:100806488 914.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2571 3 78689781 78691340 Ssu3g2571 3 78689781 78691340 ECH
Ssu8g0507 8 8000511 8002601 Ssu3g2571 3 78689781 78691340 ECH
Ssu8g0507 8 8000511 8002601 Ssu3g2571 3 78689781 78691340 PCT