Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2564 ATGGAACAGAGAGTGAGAGGGATGGAGGCATTTCCAAGAGACCAACGTGGCTCGCTCGAAGTGTTcaacccttcttcttcttcttcttactcCACCGAGAAGCCGGCGAACTCGCCGCTGCGGTCTCAGTCCACGTGGAAGACGTGGATTGACTCACGCGCCGACGAGCCGCCGGAACAGCGCGGTTGCGACGAGGTCACCGCGACGTCATGGATGGCGCTAAAGGACTCCACTCCCCCGCCGCCGACGCTCGCCACAGTGCTCGGCGAGCCTCTGCCGGCAGCGGGGGAGGTTGGGACCGCGGCGAAGAGAGCCGCGGAGTGGGGTCTGGTGCTGAAGACGGACACGGAGACGGGTAAGCCGCAGGGAGTGGCGGTCCGGACCTCCGGCGGGGAGGAGCCGAGCGCGAAGGTGGCGGGCGGGTCGAGGAGGGACTCGAGCAACTCGGTGAGGAGCTCCGGCGAGTCGTCGGACGACGGGAGGGAGTACCGGGGGGGAATACCGAGGGTTTCGGAGGACCTGAGGGACGCTCTGTCGGCGTTTCAACAGACTTTCGTGGTTTCGGACGCTACCAAACCCGATTACCCGATCATGTATGCCAGTGCCGGGTTTTTTAAGATGACGGGTTACACATCCAAGGAGGTCATAGGGAGAAACTGTCGGTTTTTACAGGGAGCAGACACGGATCCGGATGATGTGGCAAAGATAAGGGAAGCTTTACAAACTGGGTCTACTTATTGTGGAAGGTTACTCAATTACAAGAAGGATGGGACACCCTTTTGGAACCTTCTCACTATTGCTCCTATCAAAGACGACGATGGCAGAGTCCTCAAATTCATCGGAATGCAAGTGGAGGTTAGCAAGCATACAGAGGGGACCAAGGAAAAGATGCTACGTCCCAATGGATTGCCCGAATCCTTGATTCGATACGATGCTCGTCAGAAAGAGAAGGCAAATACTTCAGTAACTGAGTTAGTGCTGGCTGTGAGGAGGCCCCGGGCACTGAGTGAATCAGCAAGCCGTCCCTTGATCAGAAAGTCAGCATCTGGTGATGATGCACAAGAGAAACCAGAAAAGTCATCTAGGAGAAAATCTGAGAGTGTGGCTTCTTTTAGACGGAAATCACACGCGGGAGACAGAAGTTCAATGGAGAAAATCACTGAGCTACCTGAAAAGAAACACAAGAACTCTCGTCGCCGTTCTTTCATGGGGTTCATCAGGAAAAGTCAATCCAACTTTGGAAGCTTTGATGATGAAGCAGTTATTGAGGACAGCTCTGAGAGTAGTGATGAGGATGATGAGAGGCCTGATAGTTTTGATGGAAAAGTACAGAAGAGGGAAAAGAGAAAGGGTCTTGATCTTGCTACCACACTTGAACGTATTGAGAAGAACTTTGTCATTACTGATCCAAGGCTGCCTGATAACCCCATTATCTTTGCATCTGATAGCTTCTTGGAGCTTACAGAGTATAGTCGTGAAGAAATTTTGGGAAGAAATTGCAGGTTTCTGCAAGGACCTGAAACGGATCCAGTTACAGTGAGAAAAATTAGAGAGGCTATTGACAATCAAACCGATGTTACCGTGCAGCTCATCAATTATACAAAGAGTGGTAAAAAGTTCTGGAACTTGTTCCATTTGCAACCTATGCGTGATCAGAAGGGAGAGGTACAGTATTTTATTGGAGTTCAACTCGATGGTAGTCAACATGTGGAGCCTCTTCACAACCGCATTGCAGACGATACTGCAGAAGAGGGAGAACAATTGGTAAAACAAACTGCTGAAAATGTTGATGATGCACTGAGAGAACTTCCAGATGCTAATTTGAAACCAGAAGATTTATGGATAAACCATTCAAAAGTGGTTCACCCCAAGCCTCATAGGAGGGATGAAGCTGCTTGGAAAGCTATTCAGAAGATCCTAGATAGTGGAGACGAGATAGGCTTGAAGCATTTTAGGCCAGTTAAACCTTTGGGATCAGGAGATACTGGCAGTGTCTATCTGGTGGAGCTATGTGAAACTGGTCAATATTTTGCCATGAAGGCTATGGAGAAGGGTGTTATGCTCAATCGTAACAAGGTGCATAGAGCTTGCACAGAGAGAGAGATCCTCGACATGCTGGACCACCCATTTCTTCCTGCATTATATGCTTCCTTTCAGACCAAGACACACGTTTGTTTGATTACTGATTATTGTGCTGGTGGAGAACTATTCCTTCTTCTTGACCGACAGCCAGCTAAGGTTCTCAGGGAAGATGCAGTGAGATTTTATGCTGCTGAAGTAGTTGTTGCGTTGGAGTATCTTCATTGCCAAGGAATAATATATCGGGATTTGAAGCCAGAAAATGTGTTACTCCAGAGCAGTGGACACGTGTCTCTAACAGATTTTGATTTGTCATGTCTAACATCCTGCAAACCACAGCTTCTAGTTCCAgctataaaagaaaagaagaaagcacAGAAAGGCCAACAGGCTCCAATATTTATGGCTGAACCTATGAGAGCATCAAATTCTTTTGTGGGCACAGAAGAGTACATAGCTCCGGAAATTATAACGGGTTCAGGCCATACAAGTGCTGTGGATTGGTGGGCTcttgGAATTCTTCTATATGAAATGTTTTATGGGTATACACCATTCAGGGGAAAGACTAGGCAAAGAACATTTACAAATATTCTCCACAAGGACCTTAAATTTCCCAAAAGTAAACAGGTAAGTTTCAGTGCAAAGCAGTTAATGTATCGGTTGTTGAACAGAGAACCCAAAAGCAGATTGGGTTCAAGAGAAGGAACAAATGAAATTAAGAATCATCCGTTCTTTCGGGGGGTCAATTGGGCCCTAGTTCGTTGCACGAAACCTCCTGAGCTAGATGCTCCTCTCTTCGACACAactgaagaaaaaaaggaagccAAATATGAAGATCAAGTGCAAGAGGAGATGAACGTCTTCTGA 2946 0.4664 MEQRVRGMEAFPRDQRGSLEVFNPSSSSSYSTEKPANSPLRSQSTWKTWIDSRADEPPEQRGCDEVTATSWMALKDSTPPPPTLATVLGEPLPAAGEVGTAAKRAAEWGLVLKTDTETGKPQGVAVRTSGGEEPSAKVAGGSRRDSSNSVRSSGESSDDGREYRGGIPRVSEDLRDALSAFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPDDVAKIREALQTGSTYCGRLLNYKKDGTPFWNLLTIAPIKDDDGRVLKFIGMQVEVSKHTEGTKEKMLRPNGLPESLIRYDARQKEKANTSVTELVLAVRRPRALSESASRPLIRKSASGDDAQEKPEKSSRRKSESVASFRRKSHAGDRSSMEKITELPEKKHKNSRRRSFMGFIRKSQSNFGSFDDEAVIEDSSESSDEDDERPDSFDGKVQKREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPVTVRKIREAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNRIADDTAEEGEQLVKQTAENVDDALRELPDANLKPEDLWINHSKVVHPKPHRRDEAAWKAIQKILDSGDEIGLKHFRPVKPLGSGDTGSVYLVELCETGQYFAMKAMEKGVMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHVCLITDYCAGGELFLLLDRQPAKVLREDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQSSGHVSLTDFDLSCLTSCKPQLLVPAIKEKKKAQKGQQAPIFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMFYGYTPFRGKTRQRTFTNILHKDLKFPKSKQVSFSAKQLMYRLLNREPKSRLGSREGTNEIKNHPFFRGVNWALVRCTKPPELDAPLFDTTEEKKEAKYEDQVQEEMNVF 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2564 981 Gene3D Transferase(Phosphotransferase) domain 1 735 950 - -
Ssu3g2564 981 Gene3D PAS domain 439 603 - -
Ssu3g2564 981 ProSitePatterns Protein kinases ATP-binding region signature. 657 680 IPR017441 GO:0005524
Ssu3g2564 981 Gene3D PAS domain 184 341 - -
Ssu3g2564 981 MobiDBLite consensus disorder prediction 1 45 - -
Ssu3g2564 981 MobiDBLite consensus disorder prediction 416 446 - -
Ssu3g2564 981 CDD PAS 465 565 IPR000014 -
Ssu3g2564 981 Coils Coil 582 602 - -
Ssu3g2564 981 MobiDBLite consensus disorder prediction 112 167 - -
Ssu3g2564 981 ProSiteProfiles PAC domain profile. 244 298 IPR000700 -
Ssu3g2564 981 SUPERFAMILY Protein kinase-like (PK-like) 634 959 IPR011009 -
Ssu3g2564 981 MobiDBLite consensus disorder prediction 420 434 - -
Ssu3g2564 981 SMART pas_2 452 521 IPR000014 -
Ssu3g2564 981 SMART pas_2 172 241 IPR000014 -
Ssu3g2564 981 SUPERFAMILY PYP-like sensor domain (PAS domain) 191 283 IPR035965 -
Ssu3g2564 981 SUPERFAMILY PYP-like sensor domain (PAS domain) 466 565 IPR035965 -
Ssu3g2564 981 ProSiteProfiles PAC domain profile. 524 578 IPR000700 -
Ssu3g2564 981 ProSitePatterns Serine/Threonine protein kinases active-site signature. 772 784 IPR008271 GO:0004672|GO:0006468
Ssu3g2564 981 PANTHER PHOTOTROPIN-1 117 978 - -
Ssu3g2564 981 SMART pac_2 247 289 IPR001610 -
Ssu3g2564 981 SMART pac_2 527 569 IPR001610 -
Ssu3g2564 981 Gene3D Phosphorylase Kinase; domain 1 650 734 - -
Ssu3g2564 981 ProSiteProfiles PAS repeat profile. 170 241 IPR000014 -
Ssu3g2564 981 Pfam PAS domain 191 287 IPR000014 -
Ssu3g2564 981 Pfam PAS domain 473 565 IPR000014 -
Ssu3g2564 981 CDD STKc_phototropin_like 649 957 - -
Ssu3g2564 981 SMART serkin_6 651 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2564 981 PANTHER FLIPPASE KINASE 1-RELATED 117 978 - -
Ssu3g2564 981 MobiDBLite consensus disorder prediction 337 400 - -
Ssu3g2564 981 ProSiteProfiles PAS repeat profile. 450 523 IPR000014 -
Ssu3g2564 981 MobiDBLite consensus disorder prediction 19 45 - -
Ssu3g2564 981 CDD PAS 197 286 IPR000014 -
Ssu3g2564 981 MobiDBLite consensus disorder prediction 348 395 - -
Ssu3g2564 981 ProSiteProfiles Protein kinase domain profile. 651 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2564 981 TIGRFAM sensory_box: PAS domain S-box protein 197 291 IPR000014 -
Ssu3g2564 981 TIGRFAM sensory_box: PAS domain S-box protein 475 565 IPR000014 -
Ssu3g2564 981 Pfam Protein kinase domain 654 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2564 Ssu-Chr3 78587444 78602071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2564 11 981 AGC Kinase Gene Family AT3G45780 69.819 0.0 1337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Ssu3g2564 Pkinase 4.6e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2564 K20715 - gmx:100804524 1737.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2564 3 78587444 78602071 Ssu3g2564 3 78587444 78602071 ECH
Ssu8g0518 8 8188561 8204506 Ssu3g2564 3 78587444 78602071 PCT