Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2562 ATGGGTTGCTTTTGTTGCCCAGGGAAATCACGCAAAAAATCGGTTACCGAAGACTATAGCCACACCCTCAACCAGAAACCCACCAATTTCACTTCTTCAGATAGCGTCAAAGTTGATTTCAAAGTGAATGGGAAAAAGGAAGATGGTTCTAAAGGTGATCAGCTTGCTCTGGACGtgaagaatttaaatttgagagaggaGGTTTCTCAGGATGGAAAAGATAATAGCAATCGGGCGCAGACATTCAGTTTTAATGAACTTGAGGCTGCGACGGGAAACTTTAGGTTCGATTGCTTTTTGGGTGAAGGAGGCTTTGGCAAGGTTTACAAGGGACACTTGGAGAGAATAAACCAGGTTGTAGCTATAAAGCAACTTGACCCTAATGGACTTCAAGGGATTCGCGAATTTGTTGTTGAAGTGTTGACATTGAGTTTGGCAGACCACCCTAATCTTGTCAAGTTGATTGGATTTTGTGCTGAGGGAGAGCAGAGGCTATTAGTTTATGAGTACATGCCATTGGGATCCTTGGAGAACCATTTGCTTGATCATCAGCCTGGTAGAAAACCACTTGATTGGAACACAAGAATGAAAATAGCAGCTGGCGCAGCTAGGGGTTTGGAGTATCTGCATGATGAAATGAAGCCTCCTGTAATATATCGAGACTTGAAATGCTCTAACATTTTGTTAGGAGAGGGATATCATCCTAAGTTGTCCGATTTCGGCTTGGCAAAAGTAGGCCCAAGTGGTGATAAGACCCATGTTTCAACAAGGGTTATGGGCACATATGGGTACTGTGCCCCAGATTATGCAATGACGGGTCAGTTGACATTCAAGTCCGATATTTACAGCTTTGGGGTTGTTCTTTTGGAGCTCATTACTGGCCGGAAAGCTATTGACCATACAAAACCTGCCAAAGAACAAAATCTAGTTGCATGGGCAAGACCCTTGTTCAGAGATAGgagaaaattttcacaaatggTTGACCCATTACTTGAAGGTCAATATCCCGTGAGAGGCTTATACCAAGCTCTTGCCATTGCTGCTATGTGTGTTCAAGAGCAACCTAATATGCGGCCTGTTATAGTTGATGTGGTTACAGCTCTAAATTACCTTGCTTCTCAGAAGTATGATCCCCAACTTCATCCAGCACAAAGCTCTAGAAGAAGTCCACCTTCTCTGATAATGCAAAGGGACGATGAGCATAGACATAATTTAAGCATGGAGCACGTGACAGACAGATCTTAA 1245 0.4201 MGCFCCPGKSRKKSVTEDYSHTLNQKPTNFTSSDSVKVDFKVNGKKEDGSKGDQLALDVKNLNLREEVSQDGKDNSNRAQTFSFNELEAATGNFRFDCFLGEGGFGKVYKGHLERINQVVAIKQLDPNGLQGIREFVVEVLTLSLADHPNLVKLIGFCAEGEQRLLVYEYMPLGSLENHLLDHQPGRKPLDWNTRMKIAAGAARGLEYLHDEMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHTKPAKEQNLVAWARPLFRDRRKFSQMVDPLLEGQYPVRGLYQALAIAAMCVQEQPNMRPVIVDVVTALNYLASQKYDPQLHPAQSSRRSPPSLIMQRDDEHRHNLSMEHVTDRS 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2562 414 Pfam Protein tyrosine and serine/threonine kinase 97 306 IPR001245 GO:0004672|GO:0006468
Ssu3g2562 414 PIRSF ILK 27 96 - -
Ssu3g2562 414 PIRSF ILK 66 379 - -
Ssu3g2562 414 PANTHER OS07G0668900 PROTEIN 1 403 - -
Ssu3g2562 414 SUPERFAMILY Protein kinase-like (PK-like) 80 398 IPR011009 -
Ssu3g2562 414 Gene3D Transferase(Phosphotransferase) domain 1 171 387 - -
Ssu3g2562 414 CDD STKc_IRAK 100 369 - -
Ssu3g2562 414 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 403 - -
Ssu3g2562 414 ProSiteProfiles Protein kinase domain profile. 94 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2562 414 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
Ssu3g2562 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Ssu3g2562 414 SMART serkin_6 94 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2562 414 Gene3D Phosphorylase Kinase; domain 1 64 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2562 Ssu-Chr3 78572876 78577026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2562 1 373 Glycoside Hydrolase AT3G07070 56.000 1.51e-147 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Ssu3g2562 PK_Tyr_Ser-Thr 8.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2562 - - gmx:100804000 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2562 3 78572876 78577026 Ssu3g2562 3 78572876 78577026 ECH
Ssu8g0521 8 8228487 8231766 Ssu3g2562 3 78572876 78577026 ECH
Ssu8g0521 8 8228487 8231766 Ssu3g2562 3 78572876 78577026 PCT