Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2561 ATGAACAATAATGTTGGGAAAGGGAAAAGAGGTTTGGCAGAACAAAATCATATGTTTTTTGACAAAAAGAGTCTCAATAATGGAGTAGTTAACGGAGGGGTGGGCTCTGGATCATCAACTGAAGATGACCCAAGATTTAATAAGGTGACTGAAGGTGGAAACAATGGGTTGAGGGGTCTGATTCAAATGCATGGGAGCTTGCAGATTTCACAACAACCACCTCAAGGGCCAGTCATATGCTGGGAGAGATTTCTTCCTGTGAGATCAATAAAAGTTTTGCTGGTGGAAGATGATGATTCAACACGCCATGTTGTGCGTGCTCTGTTACGGAATTGTAGTTATGAAGTCACTGCTGTTTCCAGTGGTCTTCAAGCGTGGAAAGTCCTAGAAGATCCAGGTAATCACATTGATCTTGTCCTAACAGAGGTAGCTATGCCTATTTTGTCTGGAATAGGTCTTTTGTGCAAGATCATGAGCCACAAAACTCTGAAGAATATCCCAGTGATTATGATGTCATCTCATGATTCTATGGGTATAGTCTTTAAGTGTTTGTCGAAAGGCGCAGTTGATTTTTTAGTGAAACCTATTCGGAGGAATGAACTCAAAAACCTCTGGCAGCACGTTTGGAGAAGATGCCACAGTTCTAGTGGTAGTGGGAGTGAAAGTGCGACCCACACCAGAAAATCTGCAAAGTCAAGAAGTAATGATGCCTCTGAAAACAATAGTGACAGCAGTGATGAGAATGACTATGGAAGCAGAGGCTTGAGCATTCAAGATGGAAGTGACAATGGAAGTAGCACTCAGGGTTCATGGACTAAATGTCTAGCTCAAGTTGGCAGTCCTCATCCAGTTTCACCTCATAAACAATTGGTTGATGCCCCTGATAGCACGGATGCCCAAGCGATGCATACAAAGACTGAAAAAGCTAGTAGTAGATGGGTGCATGCGACAGAAAAAGAGTGCCATGAACTTATTGATCATCTTGATGATGTTGCAATGGGTAAGGACTTGGCTATGGGAATATCTTTGAATATGCAACTAGAGCATCCACTTGAGGAACTGTCTAGCAATCCAATGGGTAAAGGGGCTAATAAGATGTCTGATGTGGATGATATGCAGCTCATTAAAGGACAGAGTAATGTCGGTGAAAAAGGACAACTGGAATACAGTGGTGATAAAACCAGGACACAAGAAAATCAGGCTATGAATGTTATTGATGTTACTGATAGCAACAGTCCACAGGCTGAAAGCAGAGACTTGAACACTCCAAATGGTTTTTCTGGTTTCTCACAAACAAAAGCAAATTGTTGCTCCAAACAGCATCCATACCTTGAACTAACTTTGAAAAGGCTGGGAGATGTAAGAGATGCTAAAAATGTCTCAGGTGAAGAATGCAATGTGTTGAGACATTCAGATCTGTCAGCATTCTCAAAATATAATACTGCTTCTTCTGCTAACCAGGTTCAAACTGGAAATGTAGGAAGCTGTTCCCCACTAGACAATAGCTCAGCTGCACCAAATACAGAGACAATACACAACTTTCCATGTCATTCAAATGGCACTCCTCCAAATCAACAATCTAATGGGAGCAACAACATCAATGACATGGCCTCCACTAATACATATATTGGCACCAAACCTGATACTTTTGACAAGAAGCCAGAGTCTGTAAGATGGATTGGCTCATTTAATTCTTCTGAACTCCGAACTGTGCAGAACAATAGTATCTCTTCATCTCAGAAGAAAACTTCTACCCGGGAAGAATATACAGAAATCATTAAAGGACAAGTGGGAGGCTCTGAACATGGATTCCAAGTCGAGCACGCTCACTATCAGCTTCACCATTATAATCACATTTCCCATAAAGCTGCAGTAGATCTCCGATCAGATCATGATCTCTTACTGAAAAGCTCAACCAAAGCTGCTCAGCAATGTGTATCATCAAATGCATTTGGAGGGCCAGCAGAAAGTAATGCTGCAAACTACGCTGTGGATGGAAATGCAGTGGAGAGTGATCATGGGAGCAATGGACAGGACGGAAGCAACACCTTGACAATCAGGGCGGTGTATGTGGAAAATGGCAATTTGGCTGCTGGGAGCATTGGAGTTGGTGGCATTGataggaaaaacattggaaatgGGGCAGATGAAGGACGACTTGCATTGAGAGAGGCTGCCTTGACCAAATTTCGactaaagagaaaagaaagatgcTTTGAGAAAAGggTTCGATATCACAGCAGGAAAAAACTAGCAGAACAGCGGCCACGTATTAGGGGACAATTTGTTAGACGAATAGTGTCTGAAGccaaagatgaaaaagataaacaaagtGACAACCTGATCCTCTACTGGAATAGATTTCTTGAATTGATTGTCGTGGGTGAAAAGAAAGGGAGAATGGAGTTTCACTGCCTCGTATGGTTCATAACTATCAAGCATGGACAGTTCAGGGAATGA 2460 0.4122 MNNNVGKGKRGLAEQNHMFFDKKSLNNGVVNGGVGSGSSTEDDPRFNKVTEGGNNGLRGLIQMHGSLQISQQPPQGPVICWERFLPVRSIKVLLVEDDDSTRHVVRALLRNCSYEVTAVSSGLQAWKVLEDPGNHIDLVLTEVAMPILSGIGLLCKIMSHKTLKNIPVIMMSSHDSMGIVFKCLSKGAVDFLVKPIRRNELKNLWQHVWRRCHSSSGSGSESATHTRKSAKSRSNDASENNSDSSDENDYGSRGLSIQDGSDNGSSTQGSWTKCLAQVGSPHPVSPHKQLVDAPDSTDAQAMHTKTEKASSRWVHATEKECHELIDHLDDVAMGKDLAMGISLNMQLEHPLEELSSNPMGKGANKMSDVDDMQLIKGQSNVGEKGQLEYSGDKTRTQENQAMNVIDVTDSNSPQAESRDLNTPNGFSGFSQTKANCCSKQHPYLELTLKRLGDVRDAKNVSGEECNVLRHSDLSAFSKYNTASSANQVQTGNVGSCSPLDNSSAAPNTETIHNFPCHSNGTPPNQQSNGSNNINDMASTNTYIGTKPDTFDKKPESVRWIGSFNSSELRTVQNNSISSSQKKTSTREEYTEIIKGQVGGSEHGFQVEHAHYQLHHYNHISHKAAVDLRSDHDLLLKSSTKAAQQCVSSNAFGGPAESNAANYAVDGNAVESDHGSNGQDGSNTLTIRAVYVENGNLAAGSIGVGGIDRKNIGNGADEGRLALREAALTKFRLKRKERCFEKRVRYHSRKKLAEQRPRIRGQFVRRIVSEAKDEKDKQSDNLILYWNRFLELIVVGEKKGRMEFHCLVWFITIKHGQFRE 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2561 819 MobiDBLite consensus disorder prediction 378 399 - -
Ssu3g2561 819 CDD psREC_PRR 92 195 - -
Ssu3g2561 819 ProSiteProfiles Response regulatory domain profile. 91 209 IPR001789 GO:0000160
Ssu3g2561 819 SMART REC_2 90 205 IPR001789 GO:0000160
Ssu3g2561 819 SUPERFAMILY CheY-like 88 214 IPR011006 -
Ssu3g2561 819 Pfam Response regulator receiver domain 92 203 IPR001789 GO:0000160
Ssu3g2561 819 PANTHER TWO-COMPONENT RESPONSE REGULATOR 32 758 IPR045279 GO:0009736
Ssu3g2561 819 MobiDBLite consensus disorder prediction 235 275 - -
Ssu3g2561 819 MobiDBLite consensus disorder prediction 516 535 - -
Ssu3g2561 819 Pfam CCT motif 723 764 IPR010402 GO:0005515
Ssu3g2561 819 ProSiteProfiles CCT domain profile. 723 765 IPR010402 GO:0005515
Ssu3g2561 819 MobiDBLite consensus disorder prediction 213 313 - -
Ssu3g2561 819 Gene3D - 89 324 - -
Ssu3g2561 819 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR3 32 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2561 Ssu-Chr3 78531796 78546621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2561 37 295 Response Regulator Gene Family AT5G60100 64.151 8.89e-92 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Ssu3g2561 Response_reg 2.2e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2561 K12129 - gmx:100785796 1154.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2561 3 78531796 78546621 Ssu3g2561 3 78531796 78546621 ECH