Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2560 ATGGAAAACAATGCTGAATCTGAGAAAACGAAAGGGAAAGGGATTCCCATTCACGGAGGGAAGTACGTGCGGTACAACATCTTAGGCAACCTTTTCGAAGTCTATGCTAAGTACGCTCCCCCTCTCCAACCCGTCGGACGCGGCGCATACGGCATCGTTTGCTGTGCGACGAATTCGGAGACCAAAGAAGGAGTTGCGATAAAGAAGATTGGGAATGCCTTTGACAACAGGATCGACGCCAAGAGGACGCTTAGGGAAATCAAGCTTCTCTGTCACATGGAACATGATAACataattaaaattaaggacaTAGTTCGGCCACCGGATAGGGAAAAATTCAATGATGTGTATATTGTGTACGAATTGATGGACACCGACCTGCATCAGATTATACAGTCTTGTCAGGCTCTCACGGATGAGCACTGCCAGTACTTTTTATATCAACTCTTGCGAGGATTGAAGTACATACACTCTGCAAATGTTTTGCACCGAGATCTAAAACCAAGCAATTTACTTCTAAACGCAAACTGTGATCTCAAGATATGTGACTTTGGGCTTGCCAGAACAACCTCTGAGACCGACTTTATGACAGAATATGTTGTCACTCGTTGGTACAGAGCCCCTGAATTGCTACTGAATTGTTCAGAATATACTGCAGCTATTGATATTTGGTCGGTTGGTTGCATTTTGATGGAGATAATTAGAAGGGAGCCTCTATTTCCTGGTAAAGATTATGTCCAGCAGTTGGCCCTTATAACTGAGTTACTAGGTTCACCAAATGACTCGGATCTTGGATTCCTTAGAAGTGACAATGCAAAGAAATATGTTAAGCAGCTCCCACATGTAGAAAAGCAGTCCTTTGCAGAGCGGTTTCCTGATATGTCCCCGTTAGCAATTGATCTTGCTGAGAAAATCTTGGTCTTTGATCCCTCCAAGCGCATAACTGTCGAGGAAGCACTGAATCACCCATATATGGCAAGTCTTCATGAGATCAACGAGGAGCCCACTTGCCCAACTCCTTTCATCTTTGATTTCGAACAGACAACTCTCAACGAAGAAGATATAAAGGAGCTCATATGGAGGGAGTCTCTAAATTTCAGCCAGGATCAGATGTTGGAATAG 1122 0.434 MENNAESEKTKGKGIPIHGGKYVRYNILGNLFEVYAKYAPPLQPVGRGAYGIVCCATNSETKEGVAIKKIGNAFDNRIDAKRTLREIKLLCHMEHDNIIKIKDIVRPPDREKFNDVYIVYELMDTDLHQIIQSCQALTDEHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILMEIIRREPLFPGKDYVQQLALITELLGSPNDSDLGFLRSDNAKKYVKQLPHVEKQSFAERFPDMSPLAIDLAEKILVFDPSKRITVEEALNHPYMASLHEINEEPTCPTPFIFDFEQTTLNEEDIKELIWRESLNFSQDQMLE 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2560 373 SMART serkin_6 39 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2560 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Ssu3g2560 373 CDD STKc_TEY_MAPK 32 367 - -
Ssu3g2560 373 Gene3D Phosphorylase Kinase; domain 1 22 362 - -
Ssu3g2560 373 SUPERFAMILY Protein kinase-like (PK-like) 42 331 IPR011009 -
Ssu3g2560 373 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 13 17 371 - -
Ssu3g2560 373 ProSitePatterns Protein kinases ATP-binding region signature. 45 69 IPR017441 GO:0005524
Ssu3g2560 373 Gene3D Transferase(Phosphotransferase) domain 1 123 352 - -
Ssu3g2560 373 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 17 371 - -
Ssu3g2560 373 Pfam Protein kinase domain 43 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2560 373 ProSitePatterns MAP kinase signature. 74 177 IPR003527 GO:0004707|GO:0005524|GO:0006468
Ssu3g2560 373 ProSiteProfiles Protein kinase domain profile. 39 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2560 Ssu-Chr3 78519095 78522093 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2560 8 366 MAP Kinase Gene Family AT1G07880 79.944 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Ssu3g2560 Pkinase 6.7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2560 K04371 - gmx:100802929 726.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2560 3 78519095 78522093 Ssu3g2560 3 78519095 78522093 ECH