Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2556 ATGGCCGGAGTTAATCCGAACGGCGTCGCCGATTTTCCGGCGGTTCAGACGCACGGCGGACAGTTCATTCAGTACAACATATTCGGAAACCTCTTTGAGGTTACGGCGAAGTATCGTCCTCCGATCATGCCTATTGGTCGCGGCGCGTACGGAATCGTTTGTTCGCTGTTGAATACGGAGACGAATGAGTTGGTGGCTGTTAAGAAGATAGCGAATGCTTTCGACAATCACATGGACGCTAAGCGTACGCTCCGTGAGATTAAGCTTCTCAGGCATTTGGATCATGAAAATGTAATTGGTTTGAGAGATGTTATTCCTCCACCCTTGCGTAGAGAGTTTAATGATGTCTACATAGCCACGGAACTCATGGATACTGATCTTCACCACATCATTCGCTCCAATCAAAGTCTGTCAGAGGAGCACTGCCAAGTGAGTGCTctcaatttgttgttttttaattttttgtatcatAATTTTCACATTGGAACCTTTTGTTTTGCTGATGATCGGATGCTCTTGTATTTGCAGTACTTCTTGTATCAGATTCTTCGTGGGCTTAAGTATATACATTCTGCAAACATAATCCATAGAGATTTAAAACCGAGCAACCTGTTGCTGAATTCAAATTGCGACTTGAAGATTATTGATTTTGGTCTTGCGCGACCAACTATGGAAAGTGACTTCATGACAGAATATGTAGTCACAAGATGGTACAGAGCTCCCGAATTGTTGCTGAACTCCTCAGACTACACCTCGGCGATAGATGTGTGGTCTGTTGGTTGCATCTTCATGGAGCTTATGAATAAAAAGCCTCTATTTCCGGGCAAAGACCATGTGCATCAGATGCGCCTATTGACAGAGCTTCTTGGCACCCCAACTGATGCTGACCTTGGGTTGGTGAAAAATGAAGATGCGAGAAGATATATCAGGCAACTTCCTCAATATCCTCGCCAACCTTTAGCTCAGGTCTTCCCCCATGTTCATCCCGCAGCCATTGATCTTGTTGATAAAATGTTGACAGTTGATCCCACCAAAAGAATTACAGGTACTTTTCccattcctttctttcttttatgtttctGTAGCTAG 1089 0.4242 MAGVNPNGVADFPAVQTHGGQFIQYNIFGNLFEVTAKYRPPIMPIGRGAYGIVCSLLNTETNELVAVKKIANAFDNHMDAKRTLREIKLLRHLDHENVIGLRDVIPPPLRREFNDVYIATELMDTDLHHIIRSNQSLSEEHCQVSALNLLFFNFLYHNFHIGTFCFADDRMLLYLQYFLYQILRGLKYIHSANIIHRDLKPSNLLLNSNCDLKIIDFGLARPTMESDFMTEYVVTRWYRAPELLLNSSDYTSAIDVWSVGCIFMELMNKKPLFPGKDHVHQMRLLTELLGTPTDADLGLVKNEDARRYIRQLPQYPRQPLAQVFPHVHPAAIDLVDKMLTVDPTKRITGTFPIPFFLLCFCS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2556 362 ProSiteProfiles Protein kinase domain profile. 39 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2556 362 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 15 150 - -
Ssu3g2556 362 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 175 348 - -
Ssu3g2556 362 Gene3D Transferase(Phosphotransferase) domain 1 175 348 - -
Ssu3g2556 362 Gene3D Phosphorylase Kinase; domain 1 15 143 - -
Ssu3g2556 362 ProSitePatterns Protein kinases ATP-binding region signature. 45 69 IPR017441 GO:0005524
Ssu3g2556 362 SUPERFAMILY Protein kinase-like (PK-like) 44 348 IPR011009 -
Ssu3g2556 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Ssu3g2556 362 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 15 150 - -
Ssu3g2556 362 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 175 348 - -
Ssu3g2556 362 Pfam Protein kinase domain 44 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2556 362 SMART serkin_6 39 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2556 Ssu-Chr3 78270544 78272663 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2556 10 348 MAP Kinase Gene Family AT3G45640 77.581 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Ssu3g2556 Pkinase 6e-65 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2556 3 78270544 78272663 Ssu3g2556 3 78270544 78272663 ECH