Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2551 ATGTGCTCGAGTACAATTAATCAAAACGGAAAGAAGATTGCAGCTTTCGTTCCAAATGATGGTTGCTTGAACTTCATTGAAGAAAATGATGAAGTGCTTATTGCTGGTTTTGGCCGAAAAGGGCATGCAGTTGGAGATATCCCTGGAGTCCGATTTAAGGTTGTGAAGGTATCTGGGGTGTCTCTTCTCGCCCTCTTcaaagagaagaaggagaagcCTAGGTCTTGA 228 0.3947 MCSSTINQNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2551 75 PANTHER BNACNNG03140D PROTEIN 7 75 - -
Ssu3g2551 75 Gene3D - 2 75 IPR012340 -
Ssu3g2551 75 Pfam Ribosomal protein S12/S23 6 74 IPR006032 GO:0003735|GO:0005840|GO:0006412
Ssu3g2551 75 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 7 75 IPR006032 GO:0003735|GO:0005840|GO:0006412
Ssu3g2551 75 SUPERFAMILY Nucleic acid-binding proteins 9 73 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2551 Ssu-Chr3 78187483 78187821 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2551 8 75 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 97.059 1.06e-43 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2551 K02973 - cpap:110809891 137.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2551 3 78187483 78187821 Ssu3g2551 3 78187483 78187821 ECH
Ssu7g2373 7 46403077 46404353 Ssu3g2551 3 78187483 78187821 ECH
Ssu4g1051 4 16792036 16792660 Ssu3g2551 3 78187483 78187821 ECH