Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2544 ATGGAGGGCAGTGACACATACACCCCCAGTTCCTCTGCCCCACTTTCTCACTCTCCcacttcctcttcttcctcaccTCCAGCAGCTCCCACAGTTGTGATGAGCCCTTGTGCTGCATGCAAGATTTTGAGGAGAAGATGTGCTGAGAAATGTGTATTGGCACCTTACTTCCCTCCCACTGACCCTGCCAAGTTTACCATTGCCCACCGTGTATTTGGTGCCAGCAACATCATCAAGTTCCTACAGGAACTTCCAGAGTCTCAAAGAGCTGATGCAGTGACCAGCATGGTTTATGAGGCTAGTGCAAGAATAAGAGACCCTGTTTATGGTTGTGCAGGAGCAATTTGCCAGCTCCAAAAGCAGGTCAATGAACTTCAAGCACAATTGGCCAAGGCACAAGCTGAGCTTGTAAACATGCAACTTCAGCAAGCCAATCTTGTGGCTCTAATTTGCATGGAAATGGCAGAGAGTCCACAGGAATCACCACAGCAATCAGTGGATAATTTCATTTCAACTCCTCCCCACAGTGGTGGCTATCAAAGTAGCATGAACTTCTTTGAGGAGAACACTAGCCTAAACCCACTATGGGAGCCCCTTTGGACATGA 606 0.4653 MEGSDTYTPSSSAPLSHSPTSSSSSPPAAPTVVMSPCAACKILRRRCAEKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRADAVTSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAELVNMQLQQANLVALICMEMAESPQESPQQSVDNFISTPPHSGGYQSSMNFFEENTSLNPLWEPLWT 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2544 201 MobiDBLite consensus disorder prediction 1 30 - -
Ssu3g2544 201 Coils Coil 115 142 - -
Ssu3g2544 201 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 24 198 - -
Ssu3g2544 201 ProSiteProfiles LOB domain profile. 35 136 IPR004883 -
Ssu3g2544 201 MobiDBLite consensus disorder prediction 1 31 - -
Ssu3g2544 201 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 24 198 - -
Ssu3g2544 201 Pfam Lateral organ boundaries (LOB) domain 36 133 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2544 Ssu-Chr3 78110476 78112258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2544 32 201 AS2 family AT1G07900 65.896 1.80e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu3g2544 LOB 1.9e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2544 - - gmx:100789504 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2544 3 78110476 78112258 Ssu3g2544 3 78110476 78112258 ECH
Ssu8g0537 8 8671218 8672946 Ssu3g2544 3 78110476 78112258 ECH
Ssu8g0537 8 8671218 8672946 Ssu3g2544 3 78110476 78112258 PCT