Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2543 ATGGACTTAACCGAAGACTTGCACTGCGTATCGGAGCAACGCCGCGAGCTCGCCGCCGCGGAGGCCATGGAATCCGACCTCGACCTCGCCTTCCGCCTCCAGTTACAGGAGGCCCTCGCCGCCTCGCTCGCCGAGCATCCCTCCTCCTCCTCCGCTGCCGCGGTGGAACAGCCCGTCGTCGTCGTCGACGACGGCGGCGACGGCGCCCTGAACGCGACGGCGCTCCAGCGCGAGGAGCTGGCGCGTCTGGAGCGCGAGATGAAGGACCGGGAACAGAGCGAGGACGAGATGCGGAAGATGAGGGAGGATCTGTGCCGCCTGATCCACGATCAGAAGGTGGCGAGGGAGATTTCGGCGATTCCCGAGGCGGATTGGCAGCAGTGGGGCGATAACTTTGAGAAACCGTTCGGCGAGGGTTCGTCCTCTTCGGGGAGGAGAGAGGAAGGCCTGGTTAGGGTTTACTTTAAGGGTTTGGTGAGTGAGGAAAACGTGAGGGGCGAGAAGGTCGTGTTGGGTGGGATTGGGGTTGCGATTTGTGACCTTAGTGATAATTTGATATTCGAGGTTTCTAAGGCGCTCGTTGGGAATGGCACTAGCAAGGTCGCTGCGGAGATTAAGGCTTTGATTGAAGGTTTTAACGCTGCCACTGCTTTGGACTTGAAACGCGTCGTTTATTGTTGCGATTATTATCCCCTCTTCCAGTTTGTGAGTGGAAAATGGCCTGCGAAACAGCGGAAGATTGCTATGTTGGTTAATCAAGTGAATCTGcttcaaaagaattttacataCTGCAATCCAAGGCTTGTGGCCAGACATGATGTCAAGTTTGCCTTTAAGCTTGCTAGAGATGCGATTGTGTCTCAGTCCACGAGGCCTGAGGAATCTGAGAGTAGGAAGAGTCTGAATGAAACTTGTGTTATATGCTTGGAGGATACTGATGTCAGTCAGATTTTTTCAGTTGATGGCTGTGAACACCGCTATTGCCTTTCTTGCATgaaacaacatgtggaggtgaAATTGCTTCATGGAATGGTGCCAAAGTGCCCTCATGAGGGGTGCAAGTATGAGCTTCTAGTTGACAGCTGCCAGAAGTTCTTGACTCAAAAGTTAACTGAGACCATGCGGCAACGAAAATTTGAAGCTTCAATTCCTGTTGGTGAAAAAATTTATTGCCCTTATCCAAGATGCTCTGCATTAATGTCAAAAACTGAGGTCTTAGAGTACTCCAGAAATCTTATCGGTGAATCTGAACAATCAGGACCCAAGAAATGCCTAAAATGTCATGGCCTTTTCTGTTTTAACTGCAAGGTCCCTTGGCATAGCGGTATGACATGTTATACTTACAAAAGGATGAATCCTAACCCTCCTGCAGAAGATTTGAAGCTTAAGTTTCTGGCATCAAGGAGTTTATGGCGGCAGTGTGTGAAGTGTAACCATATGATTGAACTTGCCGAAGGTTGCTATCACATGACTTGCAGATGTGGTTACGAATTTTGCTATAACTGTGGAGCTGAGTGGAAGGACAAAAAAGCAACATGTGCTTGCCCACTTTGGGCCGAGGACAATATTTGGTTAGAGGATCATGAGAGAGATTGGGAAGAAgaggatgatgatgaagatgatgattaTAGCTCTGATTATTCTGAtgattattataactattaa 1665 0.4751 MDLTEDLHCVSEQRRELAAAEAMESDLDLAFRLQLQEALAASLAEHPSSSSAAAVEQPVVVVDDGGDGALNATALQREELARLEREMKDREQSEDEMRKMREDLCRLIHDQKVAREISAIPEADWQQWGDNFEKPFGEGSSSSGRREEGLVRVYFKGLVSEENVRGEKVVLGGIGVAICDLSDNLIFEVSKALVGNGTSKVAAEIKALIEGFNAATALDLKRVVYCCDYYPLFQFVSGKWPAKQRKIAMLVNQVNLLQKNFTYCNPRLVARHDVKFAFKLARDAIVSQSTRPEESESRKSLNETCVICLEDTDVSQIFSVDGCEHRYCLSCMKQHVEVKLLHGMVPKCPHEGCKYELLVDSCQKFLTQKLTETMRQRKFEASIPVGEKIYCPYPRCSALMSKTEVLEYSRNLIGESEQSGPKKCLKCHGLFCFNCKVPWHSGMTCYTYKRMNPNPPAEDLKLKFLASRSLWRQCVKCNHMIELAEGCYHMTCRCGYEFCYNCGAEWKDKKATCACPLWAEDNIWLEDHERDWEEEDDDEDDDYSSDYSDDYYNY 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2543 554 MobiDBLite consensus disorder prediction 529 554 - -
Ssu3g2543 554 ProSiteProfiles TRIAD supradomain profile. 301 525 IPR044066 -
Ssu3g2543 554 Coils Coil 73 103 - -
Ssu3g2543 554 Gene3D - 151 291 IPR036397 GO:0003676
Ssu3g2543 554 SUPERFAMILY RING/U-box 459 522 - -
Ssu3g2543 554 MobiDBLite consensus disorder prediction 529 547 - -
Ssu3g2543 554 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 30 526 IPR031127 GO:0004842|GO:0016567
Ssu3g2543 554 ProSiteProfiles Zinc finger RING-type profile. 305 349 IPR001841 -
Ssu3g2543 554 Pfam IBR domain, a half RING-finger domain 464 513 IPR002867 -
Ssu3g2543 554 Pfam IBR domain, a half RING-finger domain 379 445 IPR002867 -
Ssu3g2543 554 ProSitePatterns Zinc finger RING-type signature. 323 332 IPR017907 -
Ssu3g2543 554 SUPERFAMILY RING/U-box 303 384 - -
Ssu3g2543 554 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 299 384 IPR013083 -
Ssu3g2543 554 SMART ibrneu5 372 445 IPR002867 -
Ssu3g2543 554 SMART ibrneu5 458 513 IPR002867 -
Ssu3g2543 554 Pfam Reverse transcriptase-like 168 284 IPR002156 GO:0003676|GO:0004523
Ssu3g2543 554 Gene3D - 442 553 - -
Ssu3g2543 554 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 30 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2543 Ssu-Chr3 78048664 78052922 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2543 152 504 C3H Transcription Factor Family AT2G19610 34.637 3.30e-65 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2543 - - gmx:100790037 893.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2543 3 78048664 78052922 Ssu3g2543 3 78048664 78052922 ECH