Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2534 ATGGATTTGGTAACAAGCATCAAGGACAAACTGAACTATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAGTTGCAACTTTCAAAGCAGGGAAAGAAGCAGGATCTTGTTGATCGCATATTATCTGTTCTCTCAGATGAACCAGTTTCAAAAATGTGGGCTAAGAAGAATACTGTTGGAAAAGAACAGGTGGCAAAATTAGTGGATGATACATATAGGAAAATGCAGATATCTGGGGCCACTGATCTAGCATCTAAGGGACAGGGTGCATCAGATAGCAGTAGTGTAAAGGTTAAAGGTGAATTTGATGTAAAAGTTAAAGGTGAATTTGATGATTCTTTTCAACCAGATCCAAAGATTCGCTGTCTATGTGGAAGTAGATTGGAAACTGAGAATTTGGTCAAGTGTGATGATCCAAGATGCCATGTGTGGCAACACATCAGTTGCGTTATTATTCCGGAGAAACCTGCAGAAAGCATTCCACCAGTTCCggataaattttattgtgaaCTCTGTCGTCTCACTCGTGCAGACCCATTTTGGGTTTCAGTGGCACACCCTTTGCATCCTGTGAAGTTGACCACAACCAGTAATCCAACTGATGGGAACAACCCAGTGCAGAGTGTGGAGAGAAATTTTCAACTTACTAGAGCAGACAAGGACTTGGTATCAAAACCAGAATTTGATGTTGAGGCTTGGTGTATGCTCCTAAATGACAAGGTTCCATTCAGGATGCAATGGCCACAGTATACAGACCTGCTGGTCAATGGTGTTCCTGTTCGTGCAACTAACAGACCTGGTTCACAGTTGCTTGGTGCTAATGGTCGGGATGATGGTCCAATTATCACGCCATATGCAAAAGACGGAGTTAATAAGATTTCCTTAACAGGATGTGATGCTCGCATTTTTTGTTTAGGGGTTCGTATTGTTCGAAGGCGCAGTATGCCACAGATCCTAAACTTAATTCCAAAGGAGTCTGATGGTGAGCAATTTGAAGACGCTCTTGCACGTGTCTGCCGTTGTGTTGGGGGTGGAAATGCAGCTGATGCTGCCGACAGTGACAGTGATTTGGAAGTGGTTTCAGATACTTTTAGTATCAACCTTCGTTGTCCTATGAGTGGTTCAAGAATGAAGGTTGCTGGAAGATTCAAACCCTGTATTCACATGGGCTGCTTTGATCTTGAAGTTTTTGTGGAGATTAATCAACGTTCAAGGAAGTGGCAATGTCCTATATGTCTCAAAAACTATGCTTTGGAGAATATCATCATTGACCCTTATTTCAATCGCATCACTTCTatgATGATGAATTGTGGTGAAGAAATTACAGAGGTTGAGGTGAGGCCTGATGGTTCTTGGCGTGTTAAGGCAAAGAATGAAAGTGAACGCCTGGAATTAGGGAATCTAGCACAGTGGCACCTTCCAGATGGATCGCTGTGTGTTTCAGCTGATGGAGATGTCAAGAGATTGGATACATTGAAGCAGGTGAAACAGGAAGGTATTTCAGACAGTCCTACTGGTTTAAAACTTGGCATCAGGAAGAATCGCAATGGAATTTGGGAAGTCAGTAAACCTGAGGGCACAAACACCTCTTCTGGTACTAAATTGAAAGGGGTTTTTGGAAATCCTGAACAGGTTGTTATTCCAATGAGCAGCAGTGCCACTGGAAGTGACCGGGATGGTGACGATCCTAGTGTAAATCAGGGTGGTGGCGGGCATATTGACTACTCCACTACAAATGGGATGGAAATGGATTCGTTGTGTCTCAATAATGTTGATTTAGCATATGAATATACTGCACACAACATTTCTGCTCAGGTGGGTGGTGCAGAAGTTATTGTTCTTAGTGATTCTGAAGAAGACAATGATATTTTGGTATCCCCTGCAATTGCATATAAGAACAACCGAAATGATGCTACAGATGGTTACTCTGTACCACCACCTGTAATTGTCGATTCATATACTGAAGATCATAATCTTGGTGGAAATTCATGTTTAGGACTCTTCCCTAATGATGATGATTTTGGGATGCCTTCCCTGTGGTCATTGCCTTCTGGAACTCAGGCTGGTCCTGGATTCCAATTGTTTGGTTCTGATGCAGATGTGTCAGATGCATTGGTCCATCTGCAGCATGGTCCTATTGATTGCTCCTCGTCACTAAATGGTTATGCATTAGCTCCTGATGCTGCTTTGGGATCTGGTAATATCTTGCAAGATTCCAATGCTGGGCGGTCAGATGCTGATTTGAATGGTGGTTTGGTGGACAATCCATTGGCATTTGGTGGAGATGATCCCTCACTTCAGATTTTTCTCCCCACAAGACCAGCAGATTCATCCATGCAGAATGAATTGAGAGATCAAGCAAATATGGCTAACAGTGTCTGCACTGAAGAGGATTGGATATCCCTTAGTCTTGGAGGTGGTGCTGCTGGTAGCAATGGTGATGCTTCCACTCAAAATGGGTTGAATTCTAGACATCAAATCCCAACAAGAGAAGGCACCACGAATACTTTGGATGATACTGCTTCTTTACTCCTTGGGATGAATGATGTTATATCTGACAAGGCAAGTAGGCAAAGATCAGATAGCCCTTTCTCATTTCCTCGCCAAAAACGTTCTGTAAGGCCCCGCTTGTACCTTTCTATTGATTCAGATTCAGAGTAA 2664 0.4257 MDLVTSIKDKLNYFRIKELKDVLTQLQLSKQGKKQDLVDRILSVLSDEPVSKMWAKKNTVGKEQVAKLVDDTYRKMQISGATDLASKGQGASDSSSVKVKGEFDVKVKGEFDDSFQPDPKIRCLCGSRLETENLVKCDDPRCHVWQHISCVIIPEKPAESIPPVPDKFYCELCRLTRADPFWVSVAHPLHPVKLTTTSNPTDGNNPVQSVERNFQLTRADKDLVSKPEFDVEAWCMLLNDKVPFRMQWPQYTDLLVNGVPVRATNRPGSQLLGANGRDDGPIITPYAKDGVNKISLTGCDARIFCLGVRIVRRRSMPQILNLIPKESDGEQFEDALARVCRCVGGGNAADAADSDSDLEVVSDTFSINLRCPMSGSRMKVAGRFKPCIHMGCFDLEVFVEINQRSRKWQCPICLKNYALENIIIDPYFNRITSMMMNCGEEITEVEVRPDGSWRVKAKNESERLELGNLAQWHLPDGSLCVSADGDVKRLDTLKQVKQEGISDSPTGLKLGIRKNRNGIWEVSKPEGTNTSSGTKLKGVFGNPEQVVIPMSSSATGSDRDGDDPSVNQGGGGHIDYSTTNGMEMDSLCLNNVDLAYEYTAHNISAQVGGAEVIVLSDSEEDNDILVSPAIAYKNNRNDATDGYSVPPPVIVDSYTEDHNLGGNSCLGLFPNDDDFGMPSLWSLPSGTQAGPGFQLFGSDADVSDALVHLQHGPIDCSSSLNGYALAPDAALGSGNILQDSNAGRSDADLNGGLVDNPLAFGGDDPSLQIFLPTRPADSSMQNELRDQANMANSVCTEEDWISLSLGGGAAGSNGDASTQNGLNSRHQIPTREGTTNTLDDTASLLLGMNDVISDKASRQRSDSPFSFPRQKRSVRPRLYLSIDSDSE 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2534 887 MobiDBLite consensus disorder prediction 806 838 - -
Ssu3g2534 887 CDD PHD_Bye1p_SIZ1_like 122 173 - -
Ssu3g2534 887 SMART PHD_3 122 174 IPR001965 -
Ssu3g2534 887 SMART sap_9 11 45 IPR003034 -
Ssu3g2534 887 Pfam MIZ/SP-RING zinc finger 367 415 IPR004181 GO:0008270
Ssu3g2534 887 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Ssu3g2534 887 Coils Coil 16 36 - -
Ssu3g2534 887 SUPERFAMILY SAP domain 1 64 IPR036361 -
Ssu3g2534 887 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 834 - -
Ssu3g2534 887 Pfam SAP domain 12 42 IPR003034 -
Ssu3g2534 887 Gene3D SAP domain 1 61 IPR036361 -
Ssu3g2534 887 ProSitePatterns Zinc finger PHD-type signature. 123 173 IPR019786 -
Ssu3g2534 887 PANTHER SAP DOMAIN-CONTAINING PROTEIN-RELATED 9 834 - -
Ssu3g2534 887 MobiDBLite consensus disorder prediction 549 577 - -
Ssu3g2534 887 Pfam PHD-finger 122 174 IPR019787 -
Ssu3g2534 887 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 345 455 IPR013083 -
Ssu3g2534 887 ProSiteProfiles Zinc finger SP-RING-type profile. 354 437 IPR004181 GO:0008270
Ssu3g2534 887 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 179 IPR013083 -
Ssu3g2534 887 MobiDBLite consensus disorder prediction 855 887 - -
Ssu3g2534 887 SUPERFAMILY FYVE/PHD zinc finger 115 177 IPR011011 -
Ssu3g2534 887 MobiDBLite consensus disorder prediction 811 838 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2534 Ssu-Chr3 77934995 77950933 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu3g2534 PHD 3.3e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2534 - - gmx:100793735 1623.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2534 3 77934995 77950933 Ssu3g2534 3 77934995 77950933 ECH
Ssu8g0543 8 8756976 8770210 Ssu3g2534 3 77934995 77950933 PCT