Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2531 ATGGAAATTGATCTGAACCATGAAGTGACTGAGGTTGAGAAGAATGCATTCTGTGATAGGGAATGTGAGAAAGGTGCTGTTGTTAGTTGTTGGTCCTCTTCAACTTGTTCATCTTCTAGTTCCTCATCCGCAGCTCGTGTGTCCTCTTCTTACCTTGAGCTTTGGCATGCTTGTGCTGGCCCCCTCACCTCTCTTCCCAAGAAAGGAAATGTGGTGGTCTACTTTCCACAAGGTCACTTAGAACAAGTTGCCTCTTTCTCTCCTTTCACACCAATGGAGATTCCCACCTATGATCTTCAGCCACAGATCTCTTGCAGGGTTGTCAATGTCCAGCTACTTGCCAACAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCTCAGGCTGAGTTGGAAGGGATGCATTCAGAGGGAAAAGAACTTGAGGAATTGGGAGCAGAAGAGGAGGGAGGTGAAAGATCACCAACTAAATCAACCCCTCACATGTTCTGCAAAACACTAACAGCCTCTGATACCAGCACACATGGGGGCTTTTCTGTTCCTCGTAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGGCCCTCACAAGAGCTTGTTGCGAAAGACCTGCATGGTGTGGAGTGGAAATTTCGTCACATTTACAGAGGTCAGCCAAGGCGGCATCTACTCACTACTGGCTGGAGTATTTTTGTAAGCCAAAAGAATCTTGTTTCTGGTGATGCAGTGCTCTTTTTAagGGGTGAAAATGGTGAACTGAGATTGGGAATCAGAAGAGCTGTTCGACCTAGAAATGATCTTCCTGAATCAATTATCGGTAGCCAGAACTGCTATCCCAATGTCATTTCTTCTGTGGCAAATGCAATATCCACCAAAAGCAAGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCACGCAGATTTTGTTGTTCCCTACCAAAAATATGCTAAAAGCATCAAGAATCCAATGAGCATTGGGACAAGATTCAAAATGAGATTCGAAATGGACGAATCCCAAGAAAGAAGGTGTAGTAGTGGCACGTTGATTGGAACGAGCGATTTGGATCCCTATAGATGGCCTAAATCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAGGATATTGAGACTAATCATCAAGACCGAGTATCTCCATGGGAGATTGATCCTTCTGCTCCTCTGCCCCCCTTGAGCATTCAGTCTTCCCCAAGACTGAAGAAACTGCGGACAGGTCTACAGGTTGCCTCACCTAGTCACCTCATCACTGCAGCACGAGGCAGTGGGTTGGTGGGCTTTGAGGAGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATGCAGGTTTTGTGTCACTCTACTATGGATGTGACACAGTAACCAAGCCACCAGGTTTTGAGATGAGCTCTCCAAGTCATCCAAATCTTGCATCAGCTGAAGTAAGAAAGGTTACCTCTTCTGAGCTTAGTAGTATTCACCCTTTCAGTTATGCAGGCTTTGTGGAAACTAACAGGTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTCCACTGAAATCCCTGACAGGAAAGGTTGATTTGAACCTTGGTGCTTGGGGAATGCCCAATCTAAGTTGCACAACTTTCAACCTCCATCAGGCAACGAAACCCAACTTTCAGTCTGCACTTTTTCCTTATGGGGATATTCACCAAGCTGGTCAAGCTAGCTTGTTTTGCTCAAAATCCACCAGTTTCCAGAGAGAGAATGTCCCATTTAACAAGCCATCAACTCAGGCAGGGATCATTGTAAATGAAGTTGGACGATCAGATCTCCCAAATGAGCATAAGCTGCAGGACAATATTTCTGCTGCTGCTTCATTAGGGCCAGCAAATATGGGGGTTCCAAATGACAACAATGTCCAGGGAAAGGTAAATGCATGCAAACTATTTGGGTTTACTTTGTCTGGGGAAACTACTACCCAAAATTTACAGAACTCCGCTAAAAGGAGCTGCACAAAGGTTCACAAGCAAGGCAGCTTAGTTGGAAGAGCTATTGATCTTTCAAGACTGAGCGGCTACAATGATCTGCGGAGTGAACTAGAGAGACTGTTTGGCATGGAAGGCCTTCTAAAAGATCCTCATAAGGGATGGAGGGTCCTCTATACTGACAGTGAGAATGACATAATGGTTGTGGGGGATGACCCATGGCATGAGTTTTGTGATGTGGTGTCCAAGATCCATATATACACCCAAGAAGAGGTGGAAAAGATGACAATTGGGATGATCAGTGATGATACTCATAGCTGTTTGGAAGAGGCACCAGTGATTATGGAGGCTTCAAAGTCTTCCTCGGTGGGTCAGCCAGATTATTCTCCAACGGCAGTTAGAGTCTAA 2391 0.4504 MEIDLNHEVTEVEKNAFCDRECEKGAVVSCWSSSTCSSSSSSSAARVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASFSPFTPMEIPTYDLQPQISCRVVNVQLLANKENDEVYTQVTLLPQAELEGMHSEGKELEELGAEEEGGERSPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNDLPESIIGSQNCYPNVISSVANAISTKSKFHVFYSPRASHADFVVPYQKYAKSIKNPMSIGTRFKMRFEMDESQERRCSSGTLIGTSDLDPYRWPKSKWRCLMVRWDEDIETNHQDRVSPWEIDPSAPLPPLSIQSSPRLKKLRTGLQVASPSHLITAARGSGLVGFEESVRSPKVLQGQENAGFVSLYYGCDTVTKPPGFEMSSPSHPNLASAEVRKVTSSELSSIHPFSYAGFVETNRFPRVLQGQEICPLKSLTGKVDLNLGAWGMPNLSCTTFNLHQATKPNFQSALFPYGDIHQAGQASLFCSKSTSFQRENVPFNKPSTQAGIIVNEVGRSDLPNEHKLQDNISAAASLGPANMGVPNDNNVQGKVNACKLFGFTLSGETTTQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLSGYNDLRSELERLFGMEGLLKDPHKGWRVLYTDSENDIMVVGDDPWHEFCDVVSKIHIYTQEEVEKMTIGMISDDTHSCLEEAPVIMEASKSSSVGQPDYSPTAVRV 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2531 796 Gene3D - 329 399 - -
Ssu3g2531 796 PANTHER AUXIN RESPONSE FACTOR 9 784 - -
Ssu3g2531 796 SMART B3_2 165 267 IPR003340 GO:0003677
Ssu3g2531 796 CDD B3_DNA 163 265 IPR003340 GO:0003677
Ssu3g2531 796 Pfam AUX/IAA family 660 752 IPR033389 -
Ssu3g2531 796 SUPERFAMILY DNA-binding pseudobarrel domain 157 277 IPR015300 -
Ssu3g2531 796 Pfam Auxin response factor 291 373 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ssu3g2531 796 Pfam B3 DNA binding domain 165 266 IPR003340 GO:0003677
Ssu3g2531 796 Gene3D - 664 757 - -
Ssu3g2531 796 ProSiteProfiles B3 DNA-binding domain profile. 165 267 IPR003340 GO:0003677
Ssu3g2531 796 SUPERFAMILY CAD & PB1 domains 671 747 - -
Ssu3g2531 796 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 784 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu3g2531 796 Gene3D - 163 267 IPR015300 -
Ssu3g2531 796 ProSiteProfiles PB1 domain profile. 668 752 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2531 Ssu-Chr3 77909896 77916646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2531 47 796 B3 DNA Binding Superfamily AT5G60450 60.105 0.0 852
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ssu3g2531 B3 1.3e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2531 - - gmx:100783513 1480.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2531 3 77909896 77916646 Ssu3g2531 3 77909896 77916646 ECH
Ssu8g0545 8 8773105 8778313 Ssu3g2531 3 77909896 77916646 PCT