Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2527 ATGATGTCTGAAGAAACCTTTTCTGTTCCTCCCAACACAATCAGAGGATCCTTGGTTCATGTTCAAGCCCCAAGCTCAAACCCTAATCCTAACCCTAATTCAAATCCAgctaagaaaaagagaagtcTACCAGGAACACCAGATCCAGATGCAGAAGTGGTAGCTCTGTCACCTAAGTCCCTCATGGCCACCAACCGTTTCATATGTGAAATTTGCAACAAGGGTTTTCAGAGAGACCAGAACTTGCAGCTTCATAGACGTGGCCACAACCTTCCGTGGAAGCTGAAGCAGAGAACAAACAAAGATCAAGTGCGGAAGAAGGTGTACGTGTGCCCGGAGAAGAGTTGTGTGCACCATGACCCCTCTAGAGCCTTGGGGGACTTGACAGGGATAAAGAAGCACTATAGCCGAAAGCATGGCGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAATACGCTGTTCAATCCGATTGGAAGGCCCATAGCAAGATTTGTGGGACTAGAGAGTACAAATGTGACTGTGGCACGCTTTTCTCCAGGAAGGACAGCTTCATAACGCATAGAGCCTTTTGTGACGCTTTGGCTGAAGAAAGTGCGAGGATAACTACAGTTCCAGCAGCTTTAAGTGACTTGAGAAGAGATCATCATTTGACCAGTGCTCAAGCTTCGAGGATCCCTCAGATTTTCTCCGGGTTTCACTCAGAATTCGGTGGCTCAGGGTCAGAACCATTAGCGAGCTATGCTGACGCAAACCATCACCAACAAAAGCTAAGGCTGCCACTATGGCTAGACCAGGCCAATCCTCAAGTACTTCCCCCTCTTAACTTCCCAGGCAAACCAAGTGCTTTCACTTCAGGAGCAAGCACTGTCCCCGATCTAGTGCAAACAACGGACATGTTTGGGGCACAGTGGGTGAATTACCGTTACCCAGAACCAGAAGCATCACTTGGAGGTGCCAACCTGTCTGTGCTACCGCCACATGGACTGAAGcaagaacaagaagaaaacaaagggGACTTGTCGCATAGCGCAGGCTCTTTGTACTTGAGTACTCATCAGAATCAGAACCCACCTCACATGTCAGCCACCACACTGTTGCAGAAAGCGGTTCAAATGGGATCTACGAGGATGAACGACAACGTGTTTTGCTCCATGGGCGGCAACAGGAGCAGCAACAATGTTGTTAACAACAACGTTGTTGTTGAGGTTCAGAAGCTGAACGAGTTGGTGAGTGTGGAAGGGTGCACCAACTTTggaagtggtggtggtggtggtgggtaTTTATTAAATGACTCATCAAACAACTCGTTTGTGGCTGTGAATAGTGCCAGGAGTTTGGAGCACATGGTGATGCCGGTGGATGAAGAGACAACAGCATCAGTTGTGGGCAAGCAATTACACTCAATAAGCTCAAATAACAAAACCCAACTTGGTTTAACCAGAGACTTCTTGGGTGTTGGAGATAATAGCATTGACTCAATAAGAAGACCCTTCTTGCAGCAAGACCAGCTTGCTGAATTTAATGCAATGGGGTCAGCCTCGGCCATGATGAACCTGCAGAGCCAGTACGGTGGACACTACTGCTAG 1590 0.4591 MMSEETFSVPPNTIRGSLVHVQAPSSNPNPNPNSNPAKKKRSLPGTPDPDAEVVALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKDQVRKKVYVCPEKSCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVPAALSDLRRDHHLTSAQASRIPQIFSGFHSEFGGSGSEPLASYADANHHQQKLRLPLWLDQANPQVLPPLNFPGKPSAFTSGASTVPDLVQTTDMFGAQWVNYRYPEPEASLGGANLSVLPPHGLKQEQEENKGDLSHSAGSLYLSTHQNQNPPHMSATTLLQKAVQMGSTRMNDNVFCSMGGNRSSNNVVNNNVVVEVQKLNELVSVEGCTNFGSGGGGGGYLLNDSSNNSFVAVNSARSLEHMVMPVDEETTASVVGKQLHSISSNNKTQLGLTRDFLGVGDNSIDSIRRPFLQQDQLAEFNAMGSASAMMNLQSQYGGHYC 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2527 529 MobiDBLite consensus disorder prediction 1 40 - -
Ssu3g2527 529 SUPERFAMILY beta-beta-alpha zinc fingers 66 164 IPR036236 -
Ssu3g2527 529 Gene3D Classic Zinc Finger 120 201 - -
Ssu3g2527 529 Pfam Zinc-finger double-stranded RNA-binding 67 89 IPR022755 -
Ssu3g2527 529 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Ssu3g2527 529 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 24 491 - -
Ssu3g2527 529 SMART c2h2final6 144 164 IPR013087 -
Ssu3g2527 529 SMART c2h2final6 109 139 IPR013087 -
Ssu3g2527 529 SMART c2h2final6 67 89 IPR013087 -
Ssu3g2527 529 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 491 - -
Ssu3g2527 529 Gene3D Classic Zinc Finger 46 119 - -
Ssu3g2527 529 MobiDBLite consensus disorder prediction 1 50 - -
Ssu3g2527 529 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2527 Ssu-Chr3 77812995 77815053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2527 37 208 IDZ Gene Family AT3G45260 87.791 7.06e-115 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu3g2527 zf-C2H2_jaz 7.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2527 K25870 - gmx:100781896 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2527 3 77812995 77815053 Ssu3g2527 3 77812995 77815053 ECH
Ssu8g0550 8 8906222 8907880 Ssu3g2527 3 77812995 77815053 PCT