Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2524 ATGGGGAAGAAGCAGAAAATCGTCCTTCCACCGGAGCTTCCGCCGGAGATTCCAGACGACGAAGTTGAGGTTTCCGACGATGACCTCCGATTCGTCAAGGAGAACCGCGGCTATGCCTCCTTGCTTTCCAGCTTGGACACCCATTCAATCACCAAGCATGTTACACGGGTTGCTGATATCAAGGAAGATGCTTTGGAGAAACTCTATGAGAAACGCATGCAAAAGAATGCtctcaagaaagaaaaagaggaaactgGTTTGCAGGTTGATCGTGTAGATGCTCTTCCAATCAAGACATTGGATGGAAAACTCTATTACCGGACAGCTACAAAAACAGTATCAGAAAATGATCCAAGTGAAGAGGGAACTAGAGAGGATGTCGATGCAGACAAAGGTTTAGTGAAGCTAACTAAGGCTGAAAAGAGAGCCAAacttaagaaaatgaaaaaagaggcAAAAAAACAAGGGAAAGAGGTGGCTAAAGCAGAAGTGGAAGAGACACCACAAGCAGCAGTGTTGGCTGAGGTAAAAGAAGATCTTACAGCTGAGGAGGCATTTGAAAGTAAGAAGCATAAACTTGCAGAATTGGGGAATGCCTTGCTTACAGACCCAGATTCCAATATTAAATTTCTGAAGGAGATGGTGCAAATGTCTAAAGATAATGATCATACCATTGTTAAACTTGGACTTCTATCCCTCTTGGCTGTTTTCAAAGATATTGTCCCTGGCTATCGGATCAGGCTTCCTAGTGAAAAGGAACTAGAAATGAAGGTTTCAAAGGCTGTTAGAAAGATGCGTTATTATGAGTCAACTCTGCTTTCAGCATACAAGGCATATTTGCAAAGGCTGATAGCCTTAGAAAAGAAGCCTTTATTTCAGCATGTAGCAGTTCGTTGTATTTGTTCTTTGCTTGATGCAAATCCCCATTTCAACTTTCGTGAAAGTTTGTTGGATGCTTCTGTCAGAAACATAAGCTCTACTAATGAGGCTATAAGGAAACTTTGTTGTTCTACAATTAAATCACTCTTTACAAATGAGGGTAAGCATGGGGGTGAAGCTACTGTGGAGGCTGTTCGATTGATTGCCAATCATGTTAAAGCTCATAATTGCCAAATGCACCTAGATTCTGTTGATGTTTTCTTGTCCCTTTCATTTGATGAGGATCTTGTGAAGTCTGAAAAGATAGAAGAGGatcagaaattaaaaaacaagaaaagtaagaaaaggaaaaactcGGAAGCATCAAACCAGTTGGTGGAGAATGATAGAAAGAAAAGTAGGCGAGAATTGATTTCTAAGACAAGAGTGGAGGTTGAAGCTGACTACAAGGCTGCATCCTTTGCCCCGGATGTTATGGAGAGGAGACAGATGCAAACTGAAACACTCTCTGCTGTCTTTGAGACATACTTTCGTATTTTGAAGCATACAATGCAGTCCATAGGTGCCAGGCCTGAAGCAAATGCTGCGACATTATCTGCTGCAGTGGAACCCCTCCCTTTGCTTGCTCCATGTCTGAAAGGACTGGCAAAATTTTCACATCTGATTGACCTTGATTTCATGGGTGATCTAATGAACCATCTGAAAGTGCTTGCTTCTGGAAGTAGCAACTCAGGCAACACTTCTGACAAGTGTTCTAAATATCTGACTGTATCTGAACGTCTCCAATGTTGCATTGTTGCTTTTAAAGTGATGAGGAACAATCTTGATGCCTTGAATGTTGATTTACAAGATTTCTTTCTCCATCTTTACAATCTTGTACTTGAATACAGGCCAGGaagAGATCAAGGAGAGGTGTTGGCGGAAGCTTTGAAGATAATGTTGTGTGAAGATAAGCAACATGACATGCAAAAGACTGCTGCATTTATAAAACGATTAGCAACGTTTTCACTGTGTGTTGGATCTGCAGATTCAATGGCTGCCTTGGTCACAGTAAAGCATCTCCTTCAGAAGAATGTGAAGTGCAGAAATTTGTTGGAAAATGACATTGGAGGGGGCTCTGTTTCTGGCACAATTCCTAAATATCAACCATATTCCACAGACCCCAATTTAAGTGGTGCCCTTGCCTCAGTACTTTGGGAACTCAATCTTTTGTCCAGGCATTATCATCCAGCTATATCAACACTGGCCTCGGGCATTTCAAGCATGAGTACTGCACATAACCAGGTCCTTTTATCCAAGTCCTCTCCTCAACAAGCTTTTAAGGACATGTCTCTGGACCAGGAATTATGTTTCACACAAAGTGgcagtataaaattaaataacaagaagAGACGAACAAATGGCACTGCTACATCACCTTCCGTTGGTTCTACAAAAGTTACGAGTTCATTCGACGATGATGAGTTGCAAAGGAAACTTAATTCCCATTTTATGCTTCTTCATGACATCAAGGAGAATGAAAGGTTGAGAAGGGAGTTGGATAGGACTGCACTATCACTACAGCTTTATGAacaatataagaaacaaaagaaacgATCAAAACCAAGTCGATGA 2493 0.3955 MGKKQKIVLPPELPPEIPDDEVEVSDDDLRFVKENRGYASLLSSLDTHSITKHVTRVADIKEDALEKLYEKRMQKNALKKEKEETGLQVDRVDALPIKTLDGKLYYRTATKTVSENDPSEEGTREDVDADKGLVKLTKAEKRAKLKKMKKEAKKQGKEVAKAEVEETPQAAVLAEVKEDLTAEEAFESKKHKLAELGNALLTDPDSNIKFLKEMVQMSKDNDHTIVKLGLLSLLAVFKDIVPGYRIRLPSEKELEMKVSKAVRKMRYYESTLLSAYKAYLQRLIALEKKPLFQHVAVRCICSLLDANPHFNFRESLLDASVRNISSTNEAIRKLCCSTIKSLFTNEGKHGGEATVEAVRLIANHVKAHNCQMHLDSVDVFLSLSFDEDLVKSEKIEEDQKLKNKKSKKRKNSEASNQLVENDRKKSRRELISKTRVEVEADYKAASFAPDVMERRQMQTETLSAVFETYFRILKHTMQSIGARPEANAATLSAAVEPLPLLAPCLKGLAKFSHLIDLDFMGDLMNHLKVLASGSSNSGNTSDKCSKYLTVSERLQCCIVAFKVMRNNLDALNVDLQDFFLHLYNLVLEYRPGRDQGEVLAEALKIMLCEDKQHDMQKTAAFIKRLATFSLCVGSADSMAALVTVKHLLQKNVKCRNLLENDIGGGSVSGTIPKYQPYSTDPNLSGALASVLWELNLLSRHYHPAISTLASGISSMSTAHNQVLLSKSSPQQAFKDMSLDQELCFTQSGSIKLNNKKRRTNGTATSPSVGSTKVTSSFDDDELQRKLNSHFMLLHDIKENERLRRELDRTALSLQLYEQYKKQKKRSKPSR 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2524 830 PANTHER NUCLEOLAR COMPLEX PROTEIN 3 2 782 IPR016903 -
Ssu3g2524 830 MobiDBLite consensus disorder prediction 410 426 - -
Ssu3g2524 830 MobiDBLite consensus disorder prediction 754 775 - -
Ssu3g2524 830 Coils Coil 61 85 - -
Ssu3g2524 830 MobiDBLite consensus disorder prediction 398 426 - -
Ssu3g2524 830 Pfam Nucleolar complex-associated protein 189 279 IPR011501 -
Ssu3g2524 830 MobiDBLite consensus disorder prediction 1 21 - -
Ssu3g2524 830 Coils Coil 138 165 - -
Ssu3g2524 830 PIRSF Noc3 2 810 IPR016903 -
Ssu3g2524 830 Pfam CBF/Mak21 family 554 709 IPR005612 -
Ssu3g2524 830 SUPERFAMILY ARM repeat 203 589 IPR016024 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2524 1 806 Core DNA Replication Machinery Family AT1G79150 58.672 0.0 915
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2524 K14834 - gmx:100776136 1373.22