Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2516 ATGGCTTCCTCGAACACTCCGAAACctgaaaagaagaaaaccaaaaaCGGAGAAATCTCCAAAGCCGAAATCAAAACGAAGAAGAAGGATAGAGACATCGAGAAAGAGGAGAACAAAACGAAGAAGAATAAGAAGCTGAAGCTCAGCAACGGCAATTCAAAACAACATGACGAGAAAGACGAAAAGGGAGTAGAAGGAAACGGAGGAGAGGCCAAAACGAACGTTTTTCCGATGAATCGTATCAGGACGATGATTAAGGGCGAAGATCCCGATATGCGTGTTTCACAGGAAGCTTTGTTGGCCATCAACAATGCTGCGGAGAAGTTCCTTGAACAATTCACGCAGGACTCTTATGCTTGTTGTGTTCAGGACCGCAAGAAATCCCTGAGTTACAAGCACCTAGCACATGTTGTTAGTAAGCAGAGGAGATATGACTTTCTTTCTGATTTTGTTCCTGAGAAAGTGAAAGCTGAGGATGCATTGAGAGAGAGAAGTTCAGCAGGCAATGGAGGATGTTAG 519 0.4258 MASSNTPKPEKKKTKNGEISKAEIKTKKKDRDIEKEENKTKKNKKLKLSNGNSKQHDEKDEKGVEGNGGEAKTNVFPMNRIRTMIKGEDPDMRVSQEALLAINNAAEKFLEQFTQDSYACCVQDRKKSLSYKHLAHVVSKQRRYDFLSDFVPEKVKAEDALRERSSAGNGGC 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2516 172 Coils Coil 19 39 - -
Ssu3g2516 172 MobiDBLite consensus disorder prediction 8 67 - -
Ssu3g2516 172 MobiDBLite consensus disorder prediction 1 75 - -
Ssu3g2516 172 SUPERFAMILY Histone-fold 75 154 IPR009072 GO:0046982
Ssu3g2516 172 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 5 168 - -
Ssu3g2516 172 Gene3D Histone, subunit A 28 153 IPR009072 GO:0046982
Ssu3g2516 172 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 76 138 IPR003958 -
Ssu3g2516 172 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR AND ARCHAEAL HISTONE FAMILY PROTEIN, EXPRESSED 5 168 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2516 65 134 CCAAT-HAP5 Transcription Factor Family AT1G07980 38.028 3.45e-14 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Ssu3g2516 CBFD_NFYB_HMF 1.6e-13 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2516 - K03506 gmx:100793738 222.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2516 3 77633624 77636622 Ssu3g2516 3 77633624 77636622 ECH