Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2511 ATGTTCAACAAAACTCTTTCTTTTGCTGATGCGATGGGGTGCTGTAATTGCTTTGGGTTTATGAGGAGACTGAACCGTCGAAGTCAAAGGTCTAAGCCTGCCATCAACAATAATATCTCCCAGGAGCCTCTGTTGGATGATGACATTGAAGATGAAGAGGGCGAGTGTttgtatgatgatgatgaggttACTAACACTAGTGTAAATGGAGATGATAGTGAGGAGCAAATTCGTCCCAAGCGATCGGAAGAAATTTTGAACTTGAGAGTAGAGAATGGCATGATTTGTAGGCAGTTTCCTGTTAAGGAGACTCACAAAGTTGTTCGCACGGAGGATGAAAATGGGAGCAAGATGATAAATGAGTATATTCGTGAGTGTAAGATTGGTTCTGGTAGCTACGGGAAAGTGGCTCTTTATCGAAGCTCTGTTGATGGAAAGCATTATGCAATTAAGGCCTTTCATAAATCTCATTTACTGAAGCTTCGAGTTGCACCCTCAGAAACTGCCATGACTGACGTACTACGTGAGgtTCTCATTATGAAAATGCTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGACCCAGAGTCGGATCACTTCTACATGGTGCTTGAATATGTGGAGGGCAAATGGGTTTGTGAGGGTTCAGGTCCCACTTGTGGCTTAGGTGAAGAGACTGCTAGGAGATACTTGCGTGATATAGTTTCTGGATTAACATATCTCCATGCTCATAATATAGTACATGGGGATATTAAACCAGATAATCTGTTGATTACTCGTCATGGTACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAgGATGATAATGATGAGCTTCGTCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGTATTCTAGGTCTGACCTATCGTGGTAAAGCTGCAGACACGTGGGCAGTAGGAGTAACTTTATACTGTATGATATTGGGCGAATACCCTTTTCTTGGAGACACACTTCAAGATACATATGACAGAATAGTCAATATTCCTATAGTGCTCCCAAATATGAATCCACAATTGAAGAACTTAATAGAAGGACTACTTTCCAAAGACCCAAGACTAAGGATGACTTTGGGTGATGTTGCGGAACATAGCTGGGTTATTGGAGATGATGGGTCAATTCCTGAGTACCTTTGTTGGTGCAGAAGGAAGAGCTTGGCAATGGAAGACAATGATGAGAGCAATACTGACTAA 1239 0.4132 MFNKTLSFADAMGCCNCFGFMRRLNRRSQRSKPAINNNISQEPLLDDDIEDEEGECLYDDDEVTNTSVNGDDSEEQIRPKRSEEILNLRVENGMICRQFPVKETHKVVRTEDENGSKMINEYIRECKIGSGSYGKVALYRSSVDGKHYAIKAFHKSHLLKLRVAPSETAMTDVLREVLIMKMLEHPNIVNLIEVIDDPESDHFYMVLEYVEGKWVCEGSGPTCGLGEETARRYLRDIVSGLTYLHAHNIVHGDIKPDNLLITRHGTVKIGDFSVSQAFEDDNDELRRSPGTPVFTAPECILGLTYRGKAADTWAVGVTLYCMILGEYPFLGDTLQDTYDRIVNIPIVLPNMNPQLKNLIEGLLSKDPRLRMTLGDVAEHSWVIGDDGSIPEYLCWCRRKSLAMEDNDESNTD 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2511 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Ssu3g2511 412 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 1 412 - -
Ssu3g2511 412 CDD STKc_LKB1_CaMKK 128 382 - -
Ssu3g2511 412 ProSiteProfiles Protein kinase domain profile. 122 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2511 412 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524
Ssu3g2511 412 SMART serkin_6 122 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2511 412 SUPERFAMILY Protein kinase-like (PK-like) 112 394 IPR011009 -
Ssu3g2511 412 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 1 412 - -
Ssu3g2511 412 Pfam Protein kinase domain 124 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2511 412 Gene3D Phosphorylase Kinase; domain 1 116 218 - -
Ssu3g2511 412 Gene3D Transferase(Phosphotransferase) domain 1 220 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2511 Ssu-Chr3 77563843 77569700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2511 128 381 CBL-interacting serine-threonine protein kinases AT5G35410 33.333 7.38e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Ssu3g2511 Pkinase 3e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2511 K00908 - gmx:100789178 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2511 3 77563843 77569700 Ssu3g2511 3 77563843 77569700 ECH