Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2506 ATGAGTAATGAGGAAAAGCCTGTGAGTGAGGATCATGATGCAGGTTCTTGCAGAAGAACAGTTTCTCTTCCAGTTCCAAAGgttgaTGATCCAATGGGGATAACTGAAGAAACCACACATGTTCCGCCTCGGAAGCGACAGAATCTTCTCCTAGAAATACCCTCAAGAACAGAAGAGTGTTCTCAAGATTTTGTTGCAATAAAAATGCCATCGACACCAAGTTCCAATCCCACTCCTACTCCAAAGAGAGTGAATTTTCTTGTGAGTTCTCGCTCTGTTGATCCTCCAACAAATTATTCTCCTGGGCCTTCAACATCAAGAGGCAGATCATCCATAAGAAGCCTGCTTCCAAAACTGAGCTTCAGGTATCGGACACAAGCAGATACTGAAAAACCAAATACTGCAGCTCCAGAAGTTTCCTGCTCAGGCATTGGAGAAAAGCCTTCAATCTCAAGATCATTGTCTCTTACTAAAATATTTACTCCAAGGATTAAGAGAACGTCGTCATTACCACTAGATGAAATTAGACAATCAAACACTGAATCTTCTCATGGTGGAAGTGTTGGTGGTCCTCTAAACAAAAGAGAAGCCCAGCAGAAGATAGCTCGCTCGCTTTCGGTACCTGCCAACAACAAAGATAAAAGCATAAGGAGGATGGATTCATTTTTCCGCGTTGTTCCTTCCACTCCTCGAGTAAAGGAAGGAAATGAATTGTTGGCCACGTCCACAACAAATGAAACCGAAGATGAGGATGCTAATGGTGAAGATATAGCTGAAGAAGAGGCTGTGTGTAGAATCTGTCTGGTTGATCTGTGTGAAGGAGGTGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATAAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAAGTTCGGAACCTACCTGTCACTCTATTACGGATCCAAAGTGTTAGAAATCGGAATAATGGTGCAAATAGGTCTCAACCGGAAGATGTAAATGGATACAGGCATGTGCattcaattttGGTTTGGCAGGAAGTTCCGGTGCTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGAAAAATGGGAACTGGTGCAATTGCCATCTCTCTTCCATTTTCCTGTGTACTGGGTCTACTCTCCTCCATGACATCATCAACAATGGTGAAGAGCAGGTTCATCTGGATTTATGCATCTGTCCAGTTTGCTCTGGTGGTTCTCTTTGCGCATATATTTTACTCTGTgGTTCATGTGCAAGCGGTTCTGTCAATCCTTCTGGCCACATTTGCTGGCTTTGGTGTGGTGATGAGTGGGAGTTCTATTCTTGTGGAGTTTTTTAGATGGAGGAGAAGAGCGCAAGCTTTATCAGAGCAGCGACATGGCCCTCAACTGATGCCACAAGCAGGACAAAATCCTCGAACTTCGAACACTCTGCGTCCAGGTTCAGGTCCTTCCAACCACAGTCAACCAGTGGTGCAAAATCAACAGAACTCAAATCAGAGCTGA 1563 0.4376 MSNEEKPVSEDHDAGSCRRTVSLPVPKVDDPMGITEETTHVPPRKRQNLLLEIPSRTEECSQDFVAIKMPSTPSSNPTPTPKRVNFLVSSRSVDPPTNYSPGPSTSRGRSSIRSLLPKLSFRYRTQADTEKPNTAAPEVSCSGIGEKPSISRSLSLTKIFTPRIKRTSSLPLDEIRQSNTESSHGGSVGGPLNKREAQQKIARSLSVPANNKDKSIRRMDSFFRVVPSTPRVKEGNELLATSTTNETEDEDANGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQSVRNRNNGANRSQPEDVNGYRHVHSILVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFALVVLFAHIFYSVVHVQAVLSILLATFAGFGVVMSGSSILVEFFRWRRRAQALSEQRHGPQLMPQAGQNPRTSNTLRPGSGPSNHSQPVVQNQQNSNQS 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2506 520 MobiDBLite consensus disorder prediction 482 520 - -
Ssu3g2506 520 Pfam RING-variant domain 264 311 IPR011016 GO:0008270
Ssu3g2506 520 MobiDBLite consensus disorder prediction 476 520 - -
Ssu3g2506 520 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 27 492 - -
Ssu3g2506 520 MobiDBLite consensus disorder prediction 170 207 - -
Ssu3g2506 520 SUPERFAMILY RING/U-box 260 315 - -
Ssu3g2506 520 MobiDBLite consensus disorder prediction 171 187 - -
Ssu3g2506 520 MobiDBLite consensus disorder prediction 1 55 - -
Ssu3g2506 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 319 IPR013083 -
Ssu3g2506 520 SMART ringv_2 263 312 IPR011016 GO:0008270
Ssu3g2506 520 CDD RING_CH-C4HC3_MARCH 264 312 - -
Ssu3g2506 520 MobiDBLite consensus disorder prediction 89 112 - -
Ssu3g2506 520 PANTHER OS02G0165000 PROTEIN 27 492 - -
Ssu3g2506 520 MobiDBLite consensus disorder prediction 1 17 - -
Ssu3g2506 520 ProSiteProfiles Zinc finger RING-CH-type profile. 256 318 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2506 Ssu-Chr3 77484266 77489591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2506 246 318 C3H Transcription Factor Family AT2G37950 45.946 8.75e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2506 - - gmx:100815566 867.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2506 3 77484266 77489591 Ssu3g2506 3 77484266 77489591 ECH
Ssu8g0561 8 9070945 9074788 Ssu3g2506 3 77484266 77489591 PCT