Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2500 ATGGCTAAAGAAGTTGAGGTTCAAGAGCAAGGAGAATACTCGGCCAAAGACTATCATGACCCTCCTCCAGCACCCTTGCTCGACCCAGAGGAGCTCACAAAGTGGTCCTTCTATAGAGCCCTCATCGCTGAGTTCATAGCAacccttctctttctttatgtAACCGTGCTCACCATTATTGGGTACAAAAGACAGACTGATCCCAACACGGGTGGCACCGAGTGTGATGGGGTTGGCATTTTGGGCATCGCTTGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCTGGAGGACACATAAACCCGGCGGTGACATTCGGGCTGTTCCTAGGACGCAAGGTGTCGCTGATAAGGGCGTTTTTGTACATGGTAGCACAGTGTGCCGGTGCAATCTGTGGCACTGGACTGGCCAAGGGCTTCCAAAAAGCATACTACAACAGGTATGGAGGTGGTGCTAACTCTGTCGCGGGTGGCTACAACAAGGGAACTGCTTTGGGTGCTGAGATTATTGGTACCTTCGTTCTTGTCTACACTGTCTTCTCTGCCACTGATCCTAAGAGGAGCGCTAGAGATTCCCATGTTCCTgTACTAGCACCACTACCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCTACAATCCCAATTACTGGTACTGGCATTAACCCAGCAAGGAGTTTCGGAGCAGCTGTAAtctacaacaaagaaaaaatctgGGATGACCAgTGGATTTTCTGGGTTGGACCATTTGTTGGAGCAGCAGTGGCTGCATTCTACCACCAATACATCCTTAGAGCAGCGGCTATCAAGGCTCTTGGATCCTTCAGGAGCAacgcttaa 858 0.4767 MAKEVEVQEQGEYSAKDYHDPPPAPLLDPEELTKWSFYRALIAEFIATLLFLYVTVLTIIGYKRQTDPNTGGTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRAFLYMVAQCAGAICGTGLAKGFQKAYYNRYGGGANSVAGGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKIWDDQWIFWVGPFVGAAVAAFYHQYILRAAAIKALGSFRSNA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2500 285 MobiDBLite consensus disorder prediction 1 24 - -
Ssu3g2500 285 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Ssu3g2500 285 MobiDBLite consensus disorder prediction 1 16 - -
Ssu3g2500 285 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g2500 285 Gene3D Glycerol uptake facilitator protein. 24 285 IPR023271 -
Ssu3g2500 285 PANTHER AQUAPORIN PIP2-7 1 285 - -
Ssu3g2500 285 SUPERFAMILY Aquaporin-like 30 271 IPR023271 -
Ssu3g2500 285 TIGRFAM MIP: MIP family channel proteins 43 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g2500 285 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g2500 285 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g2500 285 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g2500 285 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g2500 285 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g2500 285 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g2500 285 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g2500 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 285 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2500 Ssu-Chr3 77417779 77419431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2500 1 283 Major Intrinsic Protein MIP AT5G60660 80.565 5.44e-172 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2500 K09872 - gmx:100818032 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2500 3 77417779 77419431 Ssu3g2500 3 77417779 77419431 ECH
Ssu8g0567 8 9155530 9157278 Ssu3g2500 3 77417779 77419431 ECH
Ssu4g1022 4 16450786 16452363 Ssu3g2500 3 77417779 77419431 ECH
Ssu8g0567 8 9155530 9157278 Ssu3g2500 3 77417779 77419431 PCT