Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2494 atggcTATGGTCGTGGCTCAACACAGAGAAAGTAGCAGCAGTGGAAGCATTGAGAAGCACTTAGACTCTGGGAAATACGTGAGGTACACTGCTGAGCAAGTTGAGGCTCTTGAAAGGGTCTATGCTGAGTGCCCTAAGCCTAGTTCTTTGAGGAGGCAGCAATTGATCAGAGAGTGCCCCATTCTCTCCAACATCGAGCCTAAGCAAATCAAGGTTTGGTTCCAGAACCGCAGGTGTAGAGAGAAGCAGAGGAAAGAGGCCTCTCGGCTTCAGACTGTGAACCGCAAACTCACTGCGATGAACAAGCTGTTGATGGAGGAGAATGATCGGTTGCAGAAGCAGGTGTCGCAGCTTGTGTGTGAGAATGGGTTTATGAGGCAGCAATTGCATACTACATCAGCGGCAACTACTGATGCTAGCTGTGATTCGGTGGTTACTACTCCTCAGCATTCCATGAAAGATGCTAACAACCCTGCTGGACTCCTATCAATTGCGGAGGAGACCTTGACAGAGTTCCTTTCAAAGGCTACGGGAACTGCTGTAGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCACAAAGTTGTAGTGGAGTGGCAGCTCGAGCCTGTGGTCTTGTTAGTTTAGAACCTACAAAGATTGCAGAGATCCTTAAAGATCGTCTATCTTGGTTTCGGGACTGTCGGAGCCTAGAAGTTTTCACTATGTTTCCTGCTGGAAATGGAGGAACCATTGAACTTGTTTACATACAGACATATGCTCCAACAACACTGGCTCCTGCCCGGGATTTCTGGACTCTGAGATATACCACAAGTTTGGAAAATGGCAGTCTTGTGCTTTGTGAGAGGTCCCTGTCTGGTTCTGGCACGGGCCCTAATCCAGCTGCTGCTGCTCAGTTCGTAAGGGGGGAAATGCTTCCTAGTGGCTACTTGATTCGACCATGTGAGGGTGGAGGGTCAATCATTCACATAGTAGACCACCTAAATCTTGAGgcATGGAGTGTGCCAGAAGTGTTGCGGCCACTTTATGAATCATCAAAGGTGGTAGctcaaaaaatgacaattgcGGCACTTCGCTATATCAGGCAAATAGCTCAGGAAACAAGTGGTGAAGTGGTTTATGGATTGGGTAGGCAGCCTGCTGTTCTGCGAACTTTCAGCCAAAGATTGAGCAGAGGCTTCAATGATGCTGTAAATGGATTCAATGATGATGGGTGGACTGTACTGAACTGTGATGGTGCTGAGGATGTAATTATTGCAGTTAATTCAACAAAGAATTTGAGTGGCACTTCTAATCCAGCAAGTTCCCTTACATTCCTTGGAGGGATTCTCTGTGCAAAAGCTTCTATGTTACTTCAAAATGTCCCGCCAGCAGTTTTGGTTCGTTTTCTGAGGGAGCACCGCTCAGAGTGGGCTGATTTCAATGTTGATGCTTATTCTGCTGCATCACTGAAAGCTGGCACCTATGCCTATCCAGGAATGAGGCCTACAAGATTCACTGGCAGTCAAATAATCATGCCTCTTGGTCATACAATTGAACACGAAGAGATGCTTGAAGTTATTAGGCTTGAAGGCCACTCTCTTGCTCAAGAAGATGCTTTTGTTTCTAGGGACATTCATCTCTTACAGATATGCAGTGGGATTGATGAAAATGCTGTGGGGGCTTGTTCTGAGCTCATATTTGCTCCAATTGATGAAATGTTCCCCGATGATGCTCCATTGGTTCCTTCCGGTTTCCGCATCATCCCATTAGATTCAAAACCAGGTGATAAAAAGGATACAGTAGTTACAAATCGCACCCTGGATTTGACATCTGGTTTTGAAGTGGGCCCAGCAACAACTCAAGGTGCAGATGCATCATCAAGTCATAACACTCGATCGGTGTTGACTATCGCCTTCCAGTTCCCTTTTGACAGCAGTTTGCAAGATAATGTTGCTGTCATGGCACGTCAATATGTCCGTAGTGTGATTTCCTCTGTGCAGAGGGTTGCCATGGCTATATCTCCGTCTGGTATAAACCCATCTGTTGGAGCTAAACTTTCTCCTGGTTCTCCAGAGGCCGTTACTCTAGCTCACTGGATCTGCCAGAGTTATAGTTACTATTTGGGGTCTGACTTACTAAGATCAGATTCTCTTGCTGGTGACATGATGCTGAAACAACTGTGGCATCATCAAGATGCCATTCTATGCTGTTCACTGAAGTCGTTGCCAGTGTTCATATTTGCAAATCAAGCTGGCCTTGACATGTTGGAAACAACTCTAGTGGCATTACAAGACATCACattggataaaatatttgacGAGTCTGGACGCAAGGCATTGTGTGCAGACTTTGCCAAGTTAATGGAACAGGGATTTGCTTATTTGCCAGCTGGGATCTGCATGTCCACAATGGGGAGGCATGTTTCATATGACCAAGCCATCGCATGGAAAGTGCTTACTGGAGAAGATAACACCGTTCACTGCTTggctttttctttcataaattgGTCATTTGTATGA 2529 0.4524 MAMVVAQHRESSSSGSIEKHLDSGKYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGFMRQQLHTTSAATTDASCDSVVTTPQHSMKDANNPAGLLSIAEETLTEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKDRLSWFRDCRSLEVFTMFPAGNGGTIELVYIQTYAPTTLAPARDFWTLRYTTSLENGSLVLCERSLSGSGTGPNPAAAAQFVRGEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVVAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWTVLNCDGAEDVIIAVNSTKNLSGTSNPASSLTFLGGILCAKASMLLQNVPPAVLVRFLREHRSEWADFNVDAYSAASLKAGTYAYPGMRPTRFTGSQIIMPLGHTIEHEEMLEVIRLEGHSLAQEDAFVSRDIHLLQICSGIDENAVGACSELIFAPIDEMFPDDAPLVPSGFRIIPLDSKPGDKKDTVVTNRTLDLTSGFEVGPATTQGADASSSHNTRSVLTIAFQFPFDSSLQDNVAVMARQYVRSVISSVQRVAMAISPSGINPSVGAKLSPGSPEAVTLAHWICQSYSYYLGSDLLRSDSLAGDMMLKQLWHHQDAILCCSLKSLPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMEQGFAYLPAGICMSTMGRHVSYDQAIAWKVLTGEDNTVHCLAFSFINWSFV 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2494 842 Pfam START domain 164 371 IPR002913 GO:0008289
Ssu3g2494 842 Pfam MEKHLA domain 698 841 IPR013978 -
Ssu3g2494 842 SMART HOX_1 22 88 IPR001356 GO:0003677
Ssu3g2494 842 CDD START_ArGLABRA2_like 158 374 - -
Ssu3g2494 842 Gene3D - 198 380 IPR023393 -
Ssu3g2494 842 SUPERFAMILY Homeodomain-like 23 87 IPR009057 -
Ssu3g2494 842 ProSiteProfiles START domain profile. 154 382 IPR002913 GO:0008289
Ssu3g2494 842 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 842 - -
Ssu3g2494 842 Coils Coil 94 121 - -
Ssu3g2494 842 CDD bZIP 77 116 - -
Ssu3g2494 842 Gene3D - 18 91 - -
Ssu3g2494 842 CDD homeodomain 25 85 IPR001356 GO:0003677
Ssu3g2494 842 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 842 IPR044830 GO:0003700
Ssu3g2494 842 SMART START_1 163 373 IPR002913 GO:0008289
Ssu3g2494 842 Pfam Homeodomain 25 83 IPR001356 GO:0003677
Ssu3g2494 842 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677
Ssu3g2494 842 SUPERFAMILY Bet v1-like 163 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2494 Ssu-Chr3 77300400 77306089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2494 1 842 Homeobox Transcription Factor Family AT5G60690 82.332 0.0 1451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu3g2494 START 2e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2494 K09338 - gmx:100804870 1639.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2494 3 77300400 77306089 Ssu3g2494 3 77300400 77306089 ECH