Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2491 ATGAAGGAAGGCGAGAAGCTACTGGATCCACAGCTCTGGCACGCGTGCGCGGGCGGCATGGTTCAGATGCCTCAAGTGAACTCAAAGGTCTTCTACTTCCCGCAGGGTCACGCGGAGCACGCCCACACCGCCGTTGATCTGAGGGTCCCACCGCTCATTCTCTGCAGAGTCGAAGCCGTCAAGTTCATGGCAGACCCCGAAACCGACGAGGTCCTCGCGAGGCTGAGTCTGGTCCCTCTCCGAAACTCGGAACTCGGTCGCGACTCGGACGGCGGCGATGACGACGAGCCTCCCGAGAAGCCCGCGTCCTTCGCCAAGACGCTGACCCAATCCGACGCGAACAACGGCGGCGGGTTCTCGGTCCCGCGGTACTGCGCGGAGACGATTTTTCCCCGGCTCGATTACTCGGCCGAGCCGCCGGTTCAGACGGTGGTGGCGAAGGACGTTCACGGGGAGCTCTGGAAGTTTCGGCACATATATCGAGGCACGCCGCGCCGGCACTTGCTCACCACGGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTCGTCGCCGGGGACTCTGTTGTGTTTCTGAGGGCCGAGAATGGGGACTTGTGTGTTGGGATTCGGAGGGCGAAGAAGGGAATTGGGTCTGAGGCTTCTTCATCTGTGTGGAACTCGGCCTCTGGGTCTGGGAATTGTGGTATTGGGCCTTATgggcctttttcttttttcttgagaGAGGAGAATAAGATGTTAAGGAATGGTGGGAGTTTGGGTGGAAAGGTTAGAGTGAGGCCTGAGGCTGTTGTGGAAGCGGTCACACTGGCCGCTAGTAATAACccttttgaggttgtttattaCCCAAGAGCTAGTACTCCTGAGTTTTGCATTAAGGCTTCTGCTGTCAGGGCTGCTATGAGGATTCAGTGGTGTTCTGGGATGAGGTTTAAGATGGCCTTTGAAACTGAGGACTCCTCCAGGATAAGCTGGTTCATGGGAACCATTGCGTCTGTTCAGGTGGTTGACCCCATCCGCTGGCCTAATTCGCCCTGGAGGCTTCTTCAGGTTACTTGGGATGAGCCAGATTTGCTACAAAATGTGAAGCGTGTTAGCCCATGGTTGGTTGAATTGGTATCAAACATGCCAGTCATCAATTTCGCACCCTTCTCTCCACCAAGAAAGAAGCTGCGGTTTCCACAGCTCCCGGAGTTCCCCCTTGATGTTCAATTTCCAATACCAACGTTTTCAGGCAACCAGCTTGGGCCTAACAGCCCCTTTTCAGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTCTATCAGATCTCCACCTTAACAATAAACTGCAGTTGGGGTTGCTTCCAACTAATATCCAGCAACTTGAAGTGTATAGTGGGATTTCAAATGGTAACATGACCAACCATGATAAGAGCAAAGAAAGCTTGTCATGCTTGCTCACCATGGGGAAATCTAGTAAGAGTTTGGAGAAATCTGATGATGTTAAGAAACACCAGTTTTTGCTTTTTGGTCAACCAATTCTCACTGAGCAACAAATTTCCAGAAGCTGCTCTAGAGATGTGTTGTCTCGTGGAAAAAATTCACTAGATGATGATAAGGACAAAGAGAAGTGCTTTTTGGATGACTCCCAATCTGCACTCCCACAGCAGTTTTCACCAGGGAAAGCTTCTGCTGAGCTTTCTTGGCAACTTGGCTTGGATACTGGTCATTGCAAGGTTTTCTTGGAGTCAGAAGATGTAGGAAGGACCCTCGACCTATCACATCTTGGTTCTTATGAAGAGCTGTATAGGAGACTTGCCAACATGTTTGGCGTAGAAAGATCTGAGATTTTGAACCATGTGCTCTACTGTGATGCAACAGGTGCTGTTAAGCAAACTGGAGAAGAACCCTTCAGTGACTTCATGAAGACGGCAAAAAGATTGACAATTCTGACGGATTCAAGCAGCAGAAATATTAGAagGGTCTGGATTACAGGAACTCGAAATGGTGAACATGGACTGGATGCATCAACAAATAAAACAGGCCCTCTGAGCATATTTGCTTAA 2064 0.4961 MKEGEKLLDPQLWHACAGGMVQMPQVNSKVFYFPQGHAEHAHTAVDLRVPPLILCRVEAVKFMADPETDEVLARLSLVPLRNSELGRDSDGGDDDEPPEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGDLCVGIRRAKKGIGSEASSSVWNSASGSGNCGIGPYGPFSFFLREENKMLRNGGSLGGKVRVRPEAVVEAVTLAASNNPFEVVYYPRASTPEFCIKASAVRAAMRIQWCSGMRFKMAFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVINFAPFSPPRKKLRFPQLPEFPLDVQFPIPTFSGNQLGPNSPFSDNAPAGIQGARHAQIGISLSDLHLNNKLQLGLLPTNIQQLEVYSGISNGNMTNHDKSKESLSCLLTMGKSSKSLEKSDDVKKHQFLLFGQPILTEQQISRSCSRDVLSRGKNSLDDDKDKEKCFLDDSQSALPQQFSPGKASAELSWQLGLDTGHCKVFLESEDVGRTLDLSHLGSYEELYRRLANMFGVERSEILNHVLYCDATGAVKQTGEEPFSDFMKTAKRLTILTDSSSRNIRRVWITGTRNGEHGLDASTNKTGPLSIFA 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2491 687 PANTHER AUXIN RESPONSE FACTOR 2 663 - -
Ssu3g2491 687 Gene3D - 102 206 IPR015300 -
Ssu3g2491 687 SMART B3_2 104 206 IPR003340 GO:0003677
Ssu3g2491 687 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 663 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu3g2491 687 SUPERFAMILY DNA-binding pseudobarrel domain 101 218 IPR015300 -
Ssu3g2491 687 Gene3D - 573 658 - -
Ssu3g2491 687 ProSiteProfiles PB1 domain profile. 574 654 IPR000270 GO:0005515
Ssu3g2491 687 Pfam B3 DNA binding domain 104 205 IPR003340 GO:0003677
Ssu3g2491 687 CDD B3_DNA 103 204 IPR003340 GO:0003677
Ssu3g2491 687 Gene3D - 304 376 - -
Ssu3g2491 687 Pfam Auxin response factor 266 349 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ssu3g2491 687 MobiDBLite consensus disorder prediction 83 115 - -
Ssu3g2491 687 ProSiteProfiles B3 DNA-binding domain profile. 104 206 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2491 Ssu-Chr3 77250703 77253688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2491 1 658 B3 DNA Binding Superfamily AT4G30080 57.994 0.0 736
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ssu3g2491 B3 6.9e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2491 - - gmx:100814686 1164.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2491 3 77250703 77253688 Ssu3g2491 3 77250703 77253688 ECH
Ssu8g0576 8 9273743 9276576 Ssu3g2491 3 77250703 77253688 ECH
Ssu7g2412 7 47054832 47057363 Ssu3g2491 3 77250703 77253688 ECH
Ssu4g1020 4 16385958 16388681 Ssu3g2491 3 77250703 77253688 ECH
Ssu8g0576 8 9273743 9276576 Ssu3g2491 3 77250703 77253688 PCT