Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2490 ATGAAGGACTGTTGGTTTTTTGACAAGAATTTTGATGGTCTGTCGGACGAGATTTTTGATGATGTCATCGAGTTTTTTGATTTCCCCCTTGAGGATGTGGAAAGTGATGGTGAGGAACAAGATTGGGATGCTCAGTTCAAACTCCTTGAAGAGCCATCTCTTGGAGTTTTTTCAGTACAATCGTCTGAGCTGTGTGGTCAGACTCAAAATGAGAATGCGAAACTCGGGAGGAGTCTCTCTGCTTCACAGCTAGCGAAGACTGCTGGACCTACTACATATGGAAAAACTATTCCCATCCAGAATGTGTCTTTGAATGGAAAAGATCTGCACCAATTCCAAACCTACAGCCCGGTTTCTGTTTTCGAAAGCAGTAGTTCTCCCTCAGTTGAGAACTGCAGCCTCTCTCAAACATCGGTGTCTCTCAAAAGTGTCATCCGGACAAAGCGTCCACGAGGCAAACGCCAGCGTCTCTCAAACATCAGCCTGCTGTACACCATTCCTTTCATCTTTACCTCACCGGCTGGGAAATTATTAAGCACGGTCAAAAAGCAGCAGAGGAAAAAGGATATTTCCCTGCTAACCAACGAAGTTGAGATGAAGATGTCCTCATCACGGGAGTCAGTACTCAGAAAATGCATGCATTGTGAGGTGACAAAGACACCGCAATGGAGAGAAGGTCCAATGGGTCCCAAGACCCTATGCAACGCTTGTGGGGTTCGATACCGGTCTGGCCGGCTCTTTCCTGAATACCGGCCTGCGGCTAGCCCCACTTTTGTAGCATCATTGCACTCAAACTCTCACAAGAAGGTCTTAGAAATCAGGAACAGAGCCACTGACGAGACTGTTAGATGTTCCTCTTTCTTGTCTTTGTCACCAAACCTTCCTGCAAATTCTCTAGGATAG 903 0.464 MKDCWFFDKNFDGLSDEIFDDVIEFFDFPLEDVESDGEEQDWDAQFKLLEEPSLGVFSVQSSELCGQTQNENAKLGRSLSASQLAKTAGPTTYGKTIPIQNVSLNGKDLHQFQTYSPVSVFESSSSPSVENCSLSQTSVSLKSVIRTKRPRGKRQRLSNISLLYTIPFIFTSPAGKLLSTVKKQQRKKDISLLTNEVEMKMSSSRESVLRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNSHKKVLEIRNRATDETVRCSSFLSLSPNLPANSLG 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2490 300 ProSiteProfiles GATA-type zinc finger domain profile. 206 242 IPR000679 GO:0006355|GO:0043565
Ssu3g2490 300 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 20 277 - -
Ssu3g2490 300 Gene3D - 208 256 IPR013088 GO:0006355|GO:0008270
Ssu3g2490 300 SMART GATA_3 206 256 IPR000679 GO:0006355|GO:0043565
Ssu3g2490 300 CDD ZnF_GATA 211 258 IPR000679 GO:0006355|GO:0043565
Ssu3g2490 300 Pfam GATA zinc finger 212 245 IPR000679 GO:0006355|GO:0043565
Ssu3g2490 300 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 210 269 - -
Ssu3g2490 300 ProSitePatterns GATA-type zinc finger domain. 212 237 IPR000679 GO:0006355|GO:0043565
Ssu3g2490 300 PANTHER GATA TRANSCRIPTION FACTOR 20 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2490 Ssu-Chr3 77219004 77223037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2490 8 280 C2C2-Gata Transcription Factor Family AT1G08010 38.676 3.25e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ssu3g2490 GATA 3.3e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2490 - - gmx:100781869 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2490 3 77219004 77223037 Ssu3g2490 3 77219004 77223037 ECH
Ssu8g0577 8 9286207 9290060 Ssu3g2490 3 77219004 77223037 PCT