Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2486 ATGGCTTCTGAGTGTCCAAGATTTGTAAGATTTCAAGATGATGTTGAATTAGCAAAATTGCCAACAACAAACCGTGGCAATGTAATCAAGGTTAATGGAACACAAGTAGCTGAGACTAGCGGCAAAAAGGGTCTGAAGAAGGAGACAGGGAAGACAGGGAAGTTCTTGAAGGCTAGAGTATTGTCAAGAGTATTCTCAGAGGATTATGAGAGAGTTAGAAAAAGAACATTATTAGATCCCCGGGGACAAACCATTCACCGATGGAACAAGATTTTCTTGGTAGCATGTTTAGTTTCTATGTTTGTGGACCCTCTATTCTTTTATTTGCCACTAGTTCGAGATGAAGTATGCATTGATATTGGAACAGCACTTGAAGTTTTCCTCACAATGATAAGATCAATGGCAGATGTGTTTTACATGATTCAGATTCTCATGAAGTTTCGAACAGCTTATGTTGCTCCTTCTTCTCGGGTTTTTGGGAGGGGAGAACTTGTTATAGACTCTTCTAAGATAGCTACTAGGTACCTGAGCAAGGGTTTTTTGTTAGACTTTATTGCTGCATTGCCTCTTCCTCAGGTGTTAATTTGGATTGTCATCCCCAATCTTGGAGGTTCAACCATGGCAAACACAAAGAATGTGCTTCGCTTTATCATCATTTTCCAATATTTGCCAAGGCTGGTTCTGATTTTTCCACTTTCATCCCAAATTATAAAAGCTACAGGGGTTGTGACAGAAACAGCATGGGCAGGGGCTGCTTACAACTTGGTGCTTTACATGTTGGCTAGCCATTTTTTAGGAGCTAGCTGGTACCTCCTATCAATTGAACGACAAGAAGCATGCTGGAGGAGTGTCTGCGATATGGAGGAGTCATCTTGTCAATATGGATTTTTTGACTGCAAAAGGGTTGAAGATTCCCTCAGAGTCTCCTGGTTTATAGCTAGTAATGTCACAATTTCATGCTCACCAAAGGCTAACTTTTATCAGTTTGGTATATACGGTGATGCGGTGACATCCCAAGTTACAACCTCGTCATTCTTTCGCAAGTACTTCTTTTGTCTGTGGTGGGGCCTTAGGAATCTGAGTTCACTGGGACAAGGTCTTCTTACTAGCACTTTTGTTGGAGAAATAATGTTCGCCATTGTTGTTGCAACCCTTGGATTGGTTCTTTTTGCATTGCTGATTGGTAATATGCAGACATACCTCCAATCAACAACTGTCCGCTTGGAAGAATGGAGGGTCAAGAGAACTGATACAGAACAATGGATGCATCACAGGCAACTACCTCCAGAAGTTAGACAATCTGTGCGTAAATATAACCAATATAAATGGCTGGCCACACGAGGGGTAGATGAAGAAACTCTTCTCAAAGGACTTCCAACTGATCTTAGGAGAGACATCAAGCGCCACCTTTGTCTCGAACTAGTTCGACGAGTCCCATTGTTCGATCAAATGGACGAGAGGATGCTAGACGCAATATGCGAGAGGCTGAAGCCTGCACTGTGCACAGAGAGCACATATCTAGTTCGCGAGGGCGATCCCGTGAACGAGATGCTCTTCATAATCAGAGGCCACCTCGACTCCTACACCACCAACGGAGGCCGCACCGGTTTCTTCAACTCGTGCCGTATTGGGCCGGGCGATTTCTGTGGCGAGGAACTGCTGACATGGGCCTTGGGCCCACGACCGAGTTTCACACTCCCCTCTTCCACGCGAACCGTCAAGGCCATCTCAGAGGTCGAGGCCTTCGCCCTTATAGCCGAAGACCTTAGGTTCGTTGCGTCTCAGTTCAGAAGGCTACACAGCAAACAACTGAGGCACAAGTTCAGGTTTTACTCGCACCAGTGGAGAACGTGGGCTGCGTGTTTCGTACAAGCTGCATGGAGACGCTATAAGAAACGAAAGGAAGCTGCTGCTGAACTGAGAGCTAAGGAGAATCTCTCAGTGGCTGTGTATGCTACAAGGATGACTAGGAAGGGCGTGTCTGGAACAGGTTCTGGAGTTGTCAACTCTTTGCAGAAGCCACAGGAACCGGACTTTTCTGTTGATGAGTAA 2052 0.4522 MASECPRFVRFQDDVELAKLPTTNRGNVIKVNGTQVAETSGKKGLKKETGKTGKFLKARVLSRVFSEDYERVRKRTLLDPRGQTIHRWNKIFLVACLVSMFVDPLFFYLPLVRDEVCIDIGTALEVFLTMIRSMADVFYMIQILMKFRTAYVAPSSRVFGRGELVIDSSKIATRYLSKGFLLDFIAALPLPQVLIWIVIPNLGGSTMANTKNVLRFIIIFQYLPRLVLIFPLSSQIIKATGVVTETAWAGAAYNLVLYMLASHFLGASWYLLSIERQEACWRSVCDMEESSCQYGFFDCKRVEDSLRVSWFIASNVTISCSPKANFYQFGIYGDAVTSQVTTSSFFRKYFFCLWWGLRNLSSLGQGLLTSTFVGEIMFAIVVATLGLVLFALLIGNMQTYLQSTTVRLEEWRVKRTDTEQWMHHRQLPPEVRQSVRKYNQYKWLATRGVDEETLLKGLPTDLRRDIKRHLCLELVRRVPLFDQMDERMLDAICERLKPALCTESTYLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALGPRPSFTLPSSTRTVKAISEVEAFALIAEDLRFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFVQAAWRRYKKRKEAAAELRAKENLSVAVYATRMTRKGVSGTGSGVVNSLQKPQEPDFSVDE 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2486 683 PRINTS EAG/ELK/ERG potassium channel family signature 393 402 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu3g2486 683 PRINTS EAG/ELK/ERG potassium channel family signature 143 152 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu3g2486 683 PRINTS EAG/ELK/ERG potassium channel family signature 375 386 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu3g2486 683 PRINTS EAG/ELK/ERG potassium channel family signature 260 270 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu3g2486 683 PRINTS EAG/ELK/ERG potassium channel family signature 349 366 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu3g2486 683 PRINTS EAG/ELK/ERG potassium channel family signature 443 450 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu3g2486 683 Gene3D Jelly Rolls 478 598 IPR014710 -
Ssu3g2486 683 CDD CAP_ED 480 611 IPR000595 -
Ssu3g2486 683 Gene3D - 91 404 - -
Ssu3g2486 683 ProSiteProfiles cAMP/cGMP binding motif profile. 480 563 IPR000595 -
Ssu3g2486 683 SUPERFAMILY Voltage-gated potassium channels 79 402 - -
Ssu3g2486 683 SUPERFAMILY cAMP-binding domain-like 410 606 IPR018490 -
Ssu3g2486 683 Pfam Ion transport protein 88 407 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Ssu3g2486 683 MobiDBLite consensus disorder prediction 659 676 - -
Ssu3g2486 683 ProSiteProfiles IQ motif profile. 616 645 IPR000048 GO:0005515
Ssu3g2486 683 Gene3D Helix hairpin bin 407 471 - -
Ssu3g2486 683 SMART cnmp_10 480 611 IPR000595 -
Ssu3g2486 683 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 683 - -
Ssu3g2486 683 Pfam Cyclic nucleotide-binding domain 505 591 IPR000595 -
Ssu3g2486 683 PANTHER - 7 683 - -
Ssu3g2486 683 MobiDBLite consensus disorder prediction 659 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2486 Ssu-Chr3 77045419 77050215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2486 53 682 Ion Channels AT2G28260 76.609 0.0 1015
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2486 K05391 - gmx:100791992 1204.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2486 3 77045419 77050215 Ssu3g2486 3 77045419 77050215 ECH