Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2484 ATGAAGTCACAGCTCAAAATTGCTCTTGCTTTAGTCATTAGCTTGCTTTGGATTCAGCACTCATTTTGTGATGAAACTTCTGATACATCTAGCCTAAACAAGTGGAGATGTAGATGTTCTTTCCAAGGGAACCAGAGCTACTCTCTGGCTAATTGTTCAAAGTCATGTGATTGCCGCTCAGATGCTGAAGAGAGTGCATCCGTATGGACTTGCATATGTGATCCCAATGGGTTTCCCAAAGTGGCAGCAGATGGTCATAGCCCTAATTGCTTTAACGCTTGCAACTGCACCTGGGGAACTGTCAATATGCCAGGAGGTTCAAAGAAACATGTTTCCAGCAAGATTGTTGTAGTTATACTATTAATATGTGTTATATGCACGACCATCGCATTTGTTGTCTCAGTTATATGCTATGTCTACCGAAGGGACAGATGTACTATTCAATCACCAATATTCTCAACGGATAAGGAAACAAGTAGTGGCAGTACCACCAACTTAATTAGTCACAGGTCAGGGACTTCTTCAGTGCCAgaaacaaaatttgcaataaattCTTCAATTTGTCATATTACAGGATGCTTTCAGAAAGCCTCTTTCTTATTTGGGAGCCCAAAAGAAACTTATCATggaaatattattcaattttctttAGCTGAACTGGAAAATGCCACTGAAAACTTTTCATCTTCCAACCTAATTGGGCTAGGCGGAAGTAGTTATGTATACCATGGTTGGCTGAAAGATGGTAGCAATGTGGCAGTTAAACGACTAAAAGATCAAGGTGGGCCTGAAGCAGACTCTGCATTTTTCAAGGAGATTGAACTATTATCTAGACTTCATCATTGTCATTTGGTGCCTTTGCTTGGATACTGTTCAGAGTTAAAAGGAAAACATGTTCAGAGGTTACTAGTATTTGACTACATGGCTAATGGAAATTTGAGGGACTGTTTAGATGGAGTTTCTGGAAAACATATCGATTGGGCTACTCGTGTTATGATTGCAATAGGCGCTGCAAGGGGCTTGGAGTATCTCCATGAAGCAGCTGCTCCAAGAATTCTTCATAGAGATGTCAAATCAACTAACATTCTTGTGGATGAAAATTGGCAAGCAAAAATAACTGATCTTGGCATGGCTAAAAACTTGAGATCTGATGACCTCCCCAGCTGTTCAAATTCTCCAGCAAGAATGCAGGGAACATTTGGCTATTTTGCACCTGAGTATGCCATTGTTGGTAGAGCTTCACTCGAGTCAGATGTCTTTAGTTTTGGGGTGGTTCTTCTTGAGCTTATCAGTGGTCGACAACCCATCCATAAATCTACAGGCAAAGAAGAAAGCCTTGTTATATGGGCTACTCCTCGCTTACAAGATAGTAGGCGAGTAATAACGGAGTTGGTTGATCCACAATTGAAAGGAAACTTCCCAGAAGAAGAGGTGCAGGTAATGGCATACTTAGCAAAGGAGTGTTTGCTGCTGGATCCTGACACTCGACCAACCATGAGTGAGGTTGTACagattctttcaagtatttccCCAGGAAAATCTaggaggagaagaaaaattCCAGCTAGCCTCTTTCAGGAACCAGAGAATGCAGAAAAGCAAAGGCAGGCTACACCCAATAAATTTCCAACGCATAGGTCATTGTCACTAGATATTGATCACAATCTTTCtgttgagaagaaaaataaagcagCAAATGCAGTTTCAGCTGATTCTATGGAATTGATCTTCTTGACTTCAAAATCTGATGGCTCTTGTGTATCAGAAGAGGAAATAGTAGACCTGACTGAGCCTAGGTTTGAAAGATTCTGCATCACAAATGGCAATGCCTCTTGA 1836 0.3932 MKSQLKIALALVISLLWIQHSFCDETSDTSSLNKWRCRCSFQGNQSYSLANCSKSCDCRSDAEESASVWTCICDPNGFPKVAADGHSPNCFNACNCTWGTVNMPGGSKKHVSSKIVVVILLICVICTTIAFVVSVICYVYRRDRCTIQSPIFSTDKETSSGSTTNLISHRSGTSSVPETKFAINSSICHITGCFQKASFLFGSPKETYHGNIIQFSLAELENATENFSSSNLIGLGGSSYVYHGWLKDGSNVAVKRLKDQGGPEADSAFFKEIELLSRLHHCHLVPLLGYCSELKGKHVQRLLVFDYMANGNLRDCLDGVSGKHIDWATRVMIAIGAARGLEYLHEAAAPRILHRDVKSTNILVDENWQAKITDLGMAKNLRSDDLPSCSNSPARMQGTFGYFAPEYAIVGRASLESDVFSFGVVLLELISGRQPIHKSTGKEESLVIWATPRLQDSRRVITELVDPQLKGNFPEEEVQVMAYLAKECLLLDPDTRPTMSEVVQILSSISPGKSRRRRKIPASLFQEPENAEKQRQATPNKFPTHRSLSLDIDHNLSVEKKNKAANAVSADSMELIFLTSKSDGSCVSEEEIVDLTEPRFERFCITNGNAS 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2484 611 ProSiteProfiles Protein kinase domain profile. 227 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2484 611 Gene3D Transferase(Phosphotransferase) domain 1 308 525 - -
Ssu3g2484 611 Gene3D Phosphorylase Kinase; domain 1 202 307 - -
Ssu3g2484 611 SUPERFAMILY Protein kinase-like (PK-like) 207 506 IPR011009 -
Ssu3g2484 611 SMART serkin_6 227 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2484 611 ProSitePatterns Protein kinases ATP-binding region signature. 233 255 IPR017441 GO:0005524
Ssu3g2484 611 PANTHER RECEPTOR-LIKE SERINE/THREONINE-KINASE NCRK PROTEIN 2 605 - -
Ssu3g2484 611 Pfam Protein kinase domain 229 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2484 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 352 364 IPR008271 GO:0004672|GO:0006468
Ssu3g2484 611 CDD STKc_IRAK 233 509 - -
Ssu3g2484 611 PANTHER OS01G0253100 PROTEIN 2 605 IPR045271 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2484 Ssu-Chr3 76996990 77002112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2484 1 607 Receptor kinase-like Gene Family AT2G28250 52.039 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Ssu3g2484 Pkinase 4.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2484 - - gmx:100817870 1098.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2484 3 76996990 77002112 Ssu3g2484 3 76996990 77002112 ECH
Ssu8g0583 8 9404575 9408864 Ssu3g2484 3 76996990 77002112 PCT