Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2481 ATGGGAAGTCTTGTACTTACCCACAAAATTGTGCTTCATCTTAGGTTTGTTGCTTGGATGTGCTTAGGTGTGTGCTCAGCTCAATTGTCTTACGACCCTAATAATTGCACTGCAAATGAAGCTGTGCGAGGGACAAGTTACAGTTGCAAGTCAACGCAGGAGTCATGCAAAACATTCTTGGTGTATAGAGCTAATAAACATTTCAATACCATTTCAGAAGTCTCAAAGCTCTTCAACAAGAACTCTGATGAGGTGCTTCTTAAAAACAACTTCACATCTTCCTCTATGTCTCTGGTACTCAAACAAGGTAAAGAGGTGCTTATTCCTATTAATTGCACTTGTTCTGGCAATTATTATCAAACCAGTTTAAGCTATAAAGTCCCTGACAGGACAATATATTCCGAGATTGCTTGTGGGGTTTTTGAAGGGCTAGTGAAACATCTCACACTGGCTGAGGAAAACCTTTCACAAGGTAATATGCCAGAAGCTGGTTCTGAGCTTCATGTGCCTCTCATATGTGCTTGTCCTGGCAGTGAAAATTTCACCAGGAGCGAGAAGGTGAAGTACCTTGTCACATACCCTCTAATACTGGGAGATGATCCAGACAAAGTGAGTGAAAAATTTGGCATCTCAACTGAAGAATTTTATGCAGTTAATAACTTGAATCCCTTGTTAACTGTTTATCCGGAGACAGTTGTTTTAGTTCCATTAAGGGATAATCCAATCAGAATACTTGATATTCCTGATTCTCCTTCTCCACCTCCTGGTTTTCTTCCCACAAATCCAGTGGTTATGATACAGGAATCCACACAACCATCAATTTTGTATATTGCAGGATCTGTTATTGGATTTTTGTTGTTCATAACATTGCTTGCAAGTGGATTGTACATGAAGAGATTTAGGAGAAGTGATGTTGTCCATTCCTTTAGTCCAACAAACTTCCCCACTTTGTGGTCACCAACTAGAAGCTCTACTATATCTACCCAAACGGGTAAAAGCTCTACAACTTGGTGCCTATCCCCAGATCTTCTTGTTGGAATAAAGTACTACTTACTCAATTACAGCATACAAGAACTCCAAAGGGCAACCCAGAATTTCAGTGAAGAAAACAAGATTGGTGACTTTGTCTACAAGGGCTCAGTCAATGATCTTGAGGTGATGATAAAGAGGATGAGGTTGGAAAACACAGGCCAGGTGATTGATTTACATTCTAAAATCAACCACATTAATATTGTGAACTTGCTTGGTGTTTGTTATGGTGAGAGCAATGATTCATcgtcttatttagtttttgagTTGCCTAAGAATGGATGCTTGAGGGACTGCTTATCTGATCCATGCAATTCTCTAAATTGGTACAAACGGACACAAATAGCCTTTGATATTGCAACATGTCTTTACTATTTACACTGCTGTTCTTTTCCTTCCTATGCTCACATGAATGTCAGTAGTAGAAACATATTCATAACAGCAAACTGGAGGGGAAAACTGGCAGATGTTGGAAGGGCATTGGCTGCTAGTGCCACACTCACCAAAATAAATGATAGTGTGGAAATTACCAAAGGATTGGTGGCACCAGAGTACCTCTTACATGGCTCAGTTTCTGAAAAGGTTGACATTTTTGCATTTGGGATTGTTTTGCTTGAGTTGATCTCAGGAAGGGACAACTTTGATGAAAAACCAATCAAAGATTCCCTTGGATTTTTGTTGGGGGAGGCCAGTGAAGGGGGTTGTTTTGAAGGGTTAAGGAGTTTCGTGGATCCTAATCTGAAGGATTATTCTCTTCCAGAGGCTTTATGTTTGTCTTTTTTAGCAAAGGATTGTGTGGCAGATGATCCCCTGCATAGGCCAACAATGGATGATATCATGAAAGTCCTTGCAAAAATGGTTTAG 1893 0.3962 MGSLVLTHKIVLHLRFVAWMCLGVCSAQLSYDPNNCTANEAVRGTSYSCKSTQESCKTFLVYRANKHFNTISEVSKLFNKNSDEVLLKNNFTSSSMSLVLKQGKEVLIPINCTCSGNYYQTSLSYKVPDRTIYSEIACGVFEGLVKHLTLAEENLSQGNMPEAGSELHVPLICACPGSENFTRSEKVKYLVTYPLILGDDPDKVSEKFGISTEEFYAVNNLNPLLTVYPETVVLVPLRDNPIRILDIPDSPSPPPGFLPTNPVVMIQESTQPSILYIAGSVIGFLLFITLLASGLYMKRFRRSDVVHSFSPTNFPTLWSPTRSSTISTQTGKSSTTWCLSPDLLVGIKYYLLNYSIQELQRATQNFSEENKIGDFVYKGSVNDLEVMIKRMRLENTGQVIDLHSKINHINIVNLLGVCYGESNDSSSYLVFELPKNGCLRDCLSDPCNSLNWYKRTQIAFDIATCLYYLHCCSFPSYAHMNVSSRNIFITANWRGKLADVGRALAASATLTKINDSVEITKGLVAPEYLLHGSVSEKVDIFAFGIVLLELISGRDNFDEKPIKDSLGFLLGEASEGGCFEGLRSFVDPNLKDYSLPEALCLSFLAKDCVADDPLHRPTMDDIMKVLAKMV 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2481 630 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 15 629 - -
Ssu3g2481 630 ProSiteProfiles Protein kinase domain profile. 285 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2481 630 SUPERFAMILY Protein kinase-like (PK-like) 348 626 IPR011009 -
Ssu3g2481 630 ProSiteProfiles LysM domain profile. 191 235 IPR018392 -
Ssu3g2481 630 Gene3D Transferase(Phosphotransferase) domain 1 435 630 - -
Ssu3g2481 630 Pfam Protein tyrosine and serine/threonine kinase 384 564 IPR001245 GO:0004672|GO:0006468
Ssu3g2481 630 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE 15 629 - -
Ssu3g2481 630 Gene3D Phosphorylase Kinase; domain 1 347 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2481 Ssu-Chr3 76790282 76792174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2481 47 630 Receptor kinase-like Gene Family AT2G23770 29.244 1.65e-68 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Ssu3g2481 PK_Tyr_Ser-Thr 1.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2481 - - gmx:100818937 1054.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2481 3 76790282 76792174 Ssu3g2481 3 76790282 76792174 ECH