Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2473 ATGAGCAGCTTAAGACGCGAATTGCATGTTGCACAACAACTTCGGCGCGACAAATTGAGAATCCAAAACAGTTCCCAACACTTGCAAGAGTTCCCTAACAACCTTGAACAACTATCGTTACACCCGGGGTTCAACTTGGATCTCCTTCAAGTGAGAAACGTTCGAAATGGCAACATGCTTGACGAGGCAGCAACTCTTTATTCGTCGGATATGATATCCTTTTCCACAGCTTCGAATCCTTTATCCGCTCCCAGAAACCCATTGGAGTGTCAAGAGCTAATGATGGCTCAGTATGGTTCGACTTCGTTTCCTCATTCATCATCCCCAAAACACCAGCAATGCGAACCGCGCAACTTGGGTGCTAATTGGATGGTGAATTATAACGAAAGCAACCCCAACACGTTCTTCCCTTCCGAGCTCAATAACAATGCTTCTGGTGAAATGGCCAACCGAGAAATTCAAAAGCAGTTAGGGGAAATGCATTATCCACCTTCTTCGTCTCCTTCACCTCCACTTTACCATAATGCTTTGCAGGACATGGCTTATGGCGTTTGGGGAGGGAATCATGGCGAGCCTGTGCTTCATCATGGCTATGGAAATCAAGCAAACAACGAGTTACGTTTTGGGAGTGCTAATTTGTGGACAAATACTCCATTGGGTTTCACAGACAAAAAGATTAACGAACAAGACACAAATCCTCATCAGGGCCTATCGTTGTCGCTTTCATCAAACTCACAATCCAAGCCTTGTTTTGAAGAAGGGTCTGCATCAGATGACCCTCAATATTCAAAGTCTGTGAAATCCAGAAGTTGTGGGAAATCACTTCAAGACTCAATAATGGGGATGCCttcaatcaataatattacTTATCGAAATGTTGGGCCACTTGGTCCTTTCACCGGGTACGCCACGATTTTGAAGAGTTCAAGGTTCTCGAAGCCTTGTCAACAGCTGTTAGATGAGTGGTGCTGTCAACCTGGTTCAAAATTTGCGAAGGGAGGGGGTTGTGACGTTCCAGAGTGGGTCTCTCGAGATGTCAGTGCTGCTTCTCCTTCTGCTGCTGCTGATGCTCTTAATGTCGATGAAAGTGGGGTTGCTGCAAAAGGTGGAAGCAATTCGGGTGCTTCATCCTCTGTGTTGTACAGTTCAAACGAAAATACTAATAGCGCTGATGGCGGAGCCGCGAGTAGCTTTTGTCTTTCTTCTCGGCCAGAGTGCCAAAAGAACAAGGCGAAACTACTGTACATGCAAGAGGAGGTTACTAGGAGATACAAGCAATACCATCAACAAATGCAAATGGTTGTTCAATCCTTCGAGTCAGTAGCGGGTCTTAGTTCTGCTACCCCTTACGTCTCCTTGGCTCTCAAGTCAGTATCAAAACACTTCAGGTGCCTAAGAAATGCTATCTCAGATCAACTCAAGCTTACATGTGAAGTCTTGGGAGAGGACTTCTCAATACCAACCACAAGTTCTAGTAGTAAATTTGACAATAATATGGCAAGGCTAAGGTGCATGGATCAAGGCTTTCAGAAAAACAAATCTGACGGGGCTAACTTAAACTTTCTTGAGCCCCAACAACACGTATGGAGGCCCCAGAGAGGCTTACCAGAACGCTCAGTGGCAATTCTTAAAGCTTGGCTATTTGAGCATTTCCTTCATCCGTACCCCACGGACACTGATAAACACATGTTGGCTACTCAAACAGGTCTATCACGAAACCAGGTATCAAATTGGTTCATAAATGCTCGAGTCCGTGTATGGAAGCCAATGGTTGAGGAAATACACATGCTTGAAACAAAGGGCGCAACAGAAGCCCACCAAACCTCTAGTAAAAATGATCAGGGAGCTTCTGCCTCTGAAGGTAGCAACCAACCCAAAGCTGATCATCAGCCTGTGAGCAGGTTTGGCACGCGCGCATCATCACATGCAACCCCTGAAAAGCAATTTCAGTGTCTGGAAATGGGGTCATCCTCCTCTGCAGGCAACGAGGAACACATTGGAATGGACGAAGAGCAGTGGAATCAAGAGAAGCGGTCAAAACTGGAATGTCAGATTACTACAGCACCAAGTCTGGATGGGACAGTGATGGGTTTTATGCCGTACCGACGTGGCGGGCTTGAGGTTGGGGGTCTTGGGTCTGTGTCACTGACTTTGGGTCTTAGGCACGGTGTTGAAGGGGTACAACAACAGCAACTACAGCGAGAGGAGGAGCTTAGGCGTCGGTTTGGAGGGCACATGATCCATGACTTTGTGGGCTAG 2259 0.4635 MSSLRRELHVAQQLRRDKLRIQNSSQHLQEFPNNLEQLSLHPGFNLDLLQVRNVRNGNMLDEAATLYSSDMISFSTASNPLSAPRNPLECQELMMAQYGSTSFPHSSSPKHQQCEPRNLGANWMVNYNESNPNTFFPSELNNNASGEMANREIQKQLGEMHYPPSSSPSPPLYHNALQDMAYGVWGGNHGEPVLHHGYGNQANNELRFGSANLWTNTPLGFTDKKINEQDTNPHQGLSLSLSSNSQSKPCFEEGSASDDPQYSKSVKSRSCGKSLQDSIMGMPSINNITYRNVGPLGPFTGYATILKSSRFSKPCQQLLDEWCCQPGSKFAKGGGCDVPEWVSRDVSAASPSAAADALNVDESGVAAKGGSNSGASSSVLYSSNENTNSADGGAASSFCLSSRPECQKNKAKLLYMQEEVTRRYKQYHQQMQMVVQSFESVAGLSSATPYVSLALKSVSKHFRCLRNAISDQLKLTCEVLGEDFSIPTTSSSSKFDNNMARLRCMDQGFQKNKSDGANLNFLEPQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGATEAHQTSSKNDQGASASEGSNQPKADHQPVSRFGTRASSHATPEKQFQCLEMGSSSSAGNEEHIGMDEEQWNQEKRSKLECQITTAPSLDGTVMGFMPYRRGGLEVGGLGSVSLTLGLRHGVEGVQQQQLQREEELRRRFGGHMIHDFVG 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2473 752 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 30 724 - -
Ssu3g2473 752 Gene3D - 532 594 - -
Ssu3g2473 752 MobiDBLite consensus disorder prediction 224 269 - -
Ssu3g2473 752 ProSiteProfiles 'Homeobox' domain profile. 526 589 IPR001356 GO:0003677
Ssu3g2473 752 MobiDBLite consensus disorder prediction 600 663 - -
Ssu3g2473 752 SMART HOX_1 529 593 IPR001356 GO:0003677
Ssu3g2473 752 Pfam Associated with HOX 305 470 IPR006563 -
Ssu3g2473 752 CDD homeodomain 529 590 IPR001356 GO:0003677
Ssu3g2473 752 MobiDBLite consensus disorder prediction 602 663 - -
Ssu3g2473 752 SUPERFAMILY Homeodomain-like 531 595 IPR009057 -
Ssu3g2473 752 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 30 724 - -
Ssu3g2473 752 Pfam Homeobox KN domain 546 585 IPR008422 GO:0003677|GO:0006355
Ssu3g2473 752 SMART prehox3 300 471 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2473 Ssu-Chr3 76697228 76702890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2473 282 722 Homeobox Transcription Factor Family AT4G34610 37.444 6.76e-68 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Ssu3g2473 POX 4.5e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2473 - - gmx:100793050 1108.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0593 8 9548318 9554093 Ssu3g2473 3 76697228 76702890 PCT