Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2470 ATGGGCCCATCTGGCGCTGGTAAGACAACATTTCTTTCTGCATTAACCGGAAAAGCAACTGGATGTCACACAACTGGGCAAGTTCTTGTAAATGGTCAGGAATCATCTATCCGATCATACAAGAAAATCATTGGGTTTGTGCCACAAGATGATATTGTTCATGGTAATTTGACAGTGGAAGAGAATCTATGGTTCAGTGCTAGATGCAGACTCTCTGCTGATCTACCAAAAGAAGAGAAAGTGTTAGTGGTTGAAAGAGTCATTGAGTCATTAGGTCTACAGGCAATAAGGGATTCTTTAGTTGGGACAGTTGAGAAACGAGGAATCTCTGGAGGTCAAAGGAAAAGAGTAAACGTTGGATTGGAAATGGTTATGGAACCTTCCCTTCTAATTTTGGATGAACCCACATCTGGTTTGGATAGCTCATCTTCTCAATTATTGCTTAGAGCACTTAGACGTGAAGCTCTTGAAGGAGTAAACATATGTATGGTCCTTCACCAACCGAgTTACACCTTGTTCAAGATGTTTGACGATTTTATACTACTTGCAAAAGGAGGGCTTACAGTGTATCATGGACCAGTGAACAAAGTGGAAGAGTATTTTTCAAGCATGGGCATTAATGTCCCTGACCGTGTCAACCCTCCAGATTACTTCATTGACATTTTAGAAGGAATAGTAAAATTAAGCCCAAGCTTAGGAGTGAACTATAAACAACTACCTGTTAGATGGATGCTTCATAATGGGTATCCCGTGCCCATGGATATGCTACAAAGTGTTGGAGGAATGGCCACCCCAAGTGATGAAGGCTCATCACATGGAGCAGCAACTACTACGCAGAATGAAGATGTACCTTCTTTTGCTGGAGAACTTTGGCAGGATGTAAAGTGCAATGTTGAGATAAAGAAGGATAACCTTCACCTTAACTTCTTAAGTTCAAATGATTTGTCTAATCGGATAACACCAGGAGTGTTCAACCAATACAAATACTTTCTTGGAAGAGTTGGTAAGCAGCGACTAAGAGAAGCTAGAACACAGGCTGTGGATTTTTTGATTTTGCTACTAGCTGGCCTTTGCTTAGGAACACTTGCCAAAGTGAGTGATGAATCATTTGGAGCAACTGGTTACACATACACTGTAATAGCAGTATCACTCCTTTCTAAGATTGCGGCGCTGAGATCATTCTCATTGGATAAGTTGCACTATTGGCGGGAAAGTTCTTCAGGAATGAGTAGTCTGGCTTACTTTCTTTCAAAGGATACTGTTGACCATTTTAGCACAATTATCAAGCCTCTAGTATATCTTTCCATGTTCTATTTCTTCAACAATCCAAGATCATCAGTCACAGATAACTACATTGTTCTACTTTGTTTAGTCTATTGTGTCACTGGTATAGCTTATGTGTTAGCAATCTTTTTTCAACCAGGTCCAGCCCAACTGTGGTCAGTGTTACTTCCAGTAGTTTTGACTCTAGTAGCAACCTATAGTAATGAAGAAGATAGCAAATATGTGAAATTTCTATCTGACTTGTGCTACACTAAGTGGGCTCTTGAAGCATTTGTAATATCAAATGCTAAAAGATATGCTGGAGTTTGGTTAATAAGTCGATGTGGTGCGCTCTATTCTTATGGATATGATCTTAAACATTGGTACCAATGTTTAGGCCTTCTTATCTTAATGGGAATAATTAGTCGCATGCTTGCATTTTTCTGCATGATAACCTTCCAGAAGAAATAG 1734 0.3962 MGPSGAGKTTFLSALTGKATGCHTTGQVLVNGQESSIRSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKEEKVLVVERVIESLGLQAIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVLHQPSYTLFKMFDDFILLAKGGLTVYHGPVNKVEEYFSSMGINVPDRVNPPDYFIDILEGIVKLSPSLGVNYKQLPVRWMLHNGYPVPMDMLQSVGGMATPSDEGSSHGAATTTQNEDVPSFAGELWQDVKCNVEIKKDNLHLNFLSSNDLSNRITPGVFNQYKYFLGRVGKQRLREARTQAVDFLILLLAGLCLGTLAKVSDESFGATGYTYTVIAVSLLSKIAALRSFSLDKLHYWRESSSGMSSLAYFLSKDTVDHFSTIIKPLVYLSMFYFFNNPRSSVTDNYIVLLCLVYCVTGIAYVLAIFFQPGPAQLWSVLLPVVLTLVATYSNEEDSKYVKFLSDLCYTKWALEAFVISNAKRYAGVWLISRCGALYSYGYDLKHWYQCLGLLILMGIISRMLAFFCMITFQKK 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2470 577 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 1 574 - -
Ssu3g2470 577 PANTHER ABC TRANSPORTER G FAMILY MEMBER 24 1 574 - -
Ssu3g2470 577 Pfam ABC transporter 1 137 IPR003439 GO:0005524
Ssu3g2470 577 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 205 IPR027417 -
Ssu3g2470 577 Gene3D - 1 205 IPR027417 -
Ssu3g2470 577 ProSitePatterns ABC transporters family signature. 109 123 IPR017871 GO:0005524
Ssu3g2470 577 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 209 IPR003439 GO:0005524
Ssu3g2470 577 SMART AAA_5 1 195 IPR003593 -
Ssu3g2470 577 Pfam ABC-2 type transporter 166 577 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2470 Ssu-Chr3 76612395 76615047 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2470 1 190 Calmodulin-binding Proteins AT2G36910 29.187 6.21e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2470 - - gsj:114375953 1072.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2470 3 76612395 76615047 Ssu3g2470 3 76612395 76615047 ECH