Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2468 ATGGTTCACTCCACATCTCCTTATTCTAGTTCTTTGGTCAATCAAGCAAAGGCCATGAATTCTGAGACCCCTCCCTCTCTTAAAGCCATCAACACAAAGCTACCAGTTGTGAAAGGCAACAAGGACCGCCACACCAAGGTGAATGGGAGAGAACGACGTGTTTTGTTGCCACCTTTGTGCGCTGCTCGCGTCTTCCAACTCACTCGTGAGCTAGGCCACAAGACTCATGGCGAGACCATTGAGTGGCTTCTACGTCAGGCTGAGCCCTCCATTATCGCTGCCACTGGCACTGGTGAATCATCTTCCATGGTTGCATCAGCATCAGCATCATCGCCCTCTAAGAACAAAAGCACTGTTGGTCTACATGCAGATTCGGTTGGCAATGGCATCAAGTCTAAACAAGAGTTTCTACCATTGGATTTTGATTTGTTAGCAAGCTTTAATGTGGAGTTTTCTGCTAATGAGATGGCAATGCTCCAATCGTTGATGACGAGGTTGGCTTGA 504 0.4762 MVHSTSPYSSSLVNQAKAMNSETPPSLKAINTKLPVVKGNKDRHTKVNGRERRVLLPPLCAARVFQLTRELGHKTHGETIEWLLRQAEPSIIAATGTGESSSMVASASASSPSKNKSTVGLHADSVGNGIKSKQEFLPLDFDLLASFNVEFSANEMAMLQSLMTRLA 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2468 167 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 29 122 IPR005333 GO:0003700
Ssu3g2468 167 PANTHER TRANSCRIPTION FACTOR TCP16-RELATED 29 122 - -
Ssu3g2468 167 Pfam TCP family transcription factor 39 119 IPR017887 -
Ssu3g2468 167 ProSiteProfiles TCP domain profile. 40 94 IPR017887 -
Ssu3g2468 167 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2468 Ssu-Chr3 76600594 76601097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2468 41 118 TCP Transcription Factor Family AT5G23280 66.667 3.02e-31 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ssu3g2468 TCP 9.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2468 - K16221 var:108322003 186.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0598 8 9681083 9681529 Ssu3g2468 3 76600594 76601097 PCT