Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2464 ATGGCTGATATTGAGGGATCTCCAGGAAGCTCCATGCATGGAGTGACAGGGAGGGAACAAACCTTCATAGCCTCAGTGGCTTCCCCTATGGTCCCAACTGACACCACAGCCAATTTTGCTTTGCCAGTTGATTCTGAGCACAAAGCCAAGGTTTTCAAACTGTTTTCCCTAGCCAACCCCCACATGAGAACCTTCCACTTGTCTTGGATATCGTTCTTCACTTGCTTTGTCTCAACCTTTGCAGCAGCTCCCCTTGTCCCCATCATCCGTGACAACCTTAACCTCACAAAAAGTGACATTGGGAATGCCGGGGTTGCTTCTGTTTCAGGCAGCATCTTCTCTAGGCTCACAATGGGTGCAGTTTGTGACCTACTAGGCCCACGTTATGGCTGTGCCTTCCTTATCATGCTTTGTGCACCAACTGTGTTCTGCATGTCGTTTGTGAAAGATGCTGCGGGATATATAGCAGTGAGGTTCATGATTGGGTTCTCCTTGGCCACTTTTGTGTCATGCCAATACTGGATGAGCACCATGTTTAATAGTAAGATTATAGGGCTTGTGAATGGGACAGCTGCAGGGTGGGGAAACATGGGCGGTGGAGCCACTCAGCTCATAATGCCATTGATGTATGAATTGATTCGAAGAGCTGGGGCTACTCCCTTCACTGCCTGGAGAATTGCCTTCTTCGTCCCAGGTTGGTTGCATGTCATCATGGGGATCCTGGTCCTAACCCTAGGCCAAGATTTACCTGATGGCAACCTTGGTACCTTGCAGAAGAAGGGTAATGTTGCCAAAGACAAATTCTCCAAGGTGTTATGGTATGCTATAACAAATTACAGGACATGGATTTTTGCCCTCCTCTATGGTTATTCTATGGGAGTTGAATTAACAACTGACAATGTCATTGCTGAGTATTTCTATGACAGgTTTAATCTCAAGCTACGCACTGCTGGAATTATTGCTGCTTCATTTGGAATGGCAAATCTGCTGGCTCGCCCCTTTGGTGGATACACTTCTGATGTTGCAGCCAGGTTGTTTGGCATGAGGGGCAGGCTCTGGAACCTGTGGATCCTCCAAACCTTAGGAGGTGTTTTCTGCATCTGGCTTGGGCGTGCCAACTCACTTCCCATTGCAGTCTTGGCTATGATCCTCTTCTCTATTGGTGCTCAAGCTGCATGTGGTGCTACTTTTGGCATCATTCCATTCATCTCAAGGCGTTCTCTGGGGATCATATCAGGCCTAACTGGTGCTGGTGGAAACTTTGGGTCTGGCTTGACCCAGTTGATCTTCTTCTCAACCTCCAAGTTTTCTACATCCACTGGTCTCTCCCTGATGGGTGTCATGATTGTGTGTTGCACTCTTCCTGTGACTCTTGTTCACTTCCCTCAGTGGGGTAGCATGTTCCTCCCCCCTTCAAAAGATGTCAACAAGTCCACTGAGGAACACTATTACACCGCCGAATGGAACGAGGAAGAGAAGCAAAAGGGCTTGCACCATAATAGTCTCAAGTTTGCTGAGAATAGCCGTTCAGAGAGAGGTAAGCGTGTGGCCTCAGTCCCAACACCACCAAACACAACTCCAACCCATGTCTAG 1593 0.4809 MADIEGSPGSSMHGVTGREQTFIASVASPMVPTDTTANFALPVDSEHKAKVFKLFSLANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKSDIGNAGVASVSGSIFSRLTMGAVCDLLGPRYGCAFLIMLCAPTVFCMSFVKDAAGYIAVRFMIGFSLATFVSCQYWMSTMFNSKIIGLVNGTAAGWGNMGGGATQLIMPLMYELIRRAGATPFTAWRIAFFVPGWLHVIMGILVLTLGQDLPDGNLGTLQKKGNVAKDKFSKVLWYAITNYRTWIFALLYGYSMGVELTTDNVIAEYFYDRFNLKLRTAGIIAASFGMANLLARPFGGYTSDVAARLFGMRGRLWNLWILQTLGGVFCIWLGRANSLPIAVLAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLIFFSTSKFSTSTGLSLMGVMIVCCTLPVTLVHFPQWGSMFLPPSKDVNKSTEEHYYTAEWNEEEKQKGLHHNSLKFAENSRSERGKRVASVPTPPNTTPTHV 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2464 530 CDD MFS_NRT2_like 65 458 IPR044772 GO:0015112
Ssu3g2464 530 Gene3D MFS general substrate transporter like domains 264 466 IPR036259 -
Ssu3g2464 530 Pfam Major Facilitator Superfamily 69 425 IPR011701 GO:0022857|GO:0055085
Ssu3g2464 530 Gene3D MFS general substrate transporter like domains 58 253 IPR036259 -
Ssu3g2464 530 SUPERFAMILY MFS general substrate transporter 59 460 IPR036259 -
Ssu3g2464 530 MobiDBLite consensus disorder prediction 504 530 - -
Ssu3g2464 530 ProSiteProfiles Major facilitator superfamily (MFS) profile. 64 458 IPR020846 GO:0022857
Ssu3g2464 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 527 IPR044772 GO:0015112
Ssu3g2464 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.1-LIKE 1 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2464 Ssu-Chr3 76419879 76422330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2464 1 530 Inorganic Solute Cotransporters AT5G60770 80.377 0.0 894
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2464 K02575 - gmx:100807710 1019.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2464 3 76419879 76422330 Ssu3g2464 3 76419879 76422330 ECH
Ssu8g0601 8 9778270 9780459 Ssu3g2464 3 76419879 76422330 PCT