Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2461 ATGTCTCACCAGGGCGAATCATCCGACTCGAAATTGGGGAAGAAAGACTTCTCGACGGCGATTCTTGAGCGGAAGAAATCGCCGAACCGATTGATCGTCGACGAGGCCATCAACGACGACAACTCGGTGGTTTCCATGCACCCTAAAACCATGGAAAAGCTCCAACTCTTCCGCGGCGACACTATCCTCATCAAGGGGAAGAAACGGAGGGATACGATTTGCATAGCTCTTGCGGACGAGAATTGTGAGGAGCCGAAGATAAGGATGAACAAAGTTGTGAGGTCGAATTTGAGGGTTCGTCTTGGAGATGTTGTGTCTGTGCATCAGTGCCCTGATGTCAAGTATGGGAAGCGCGTTCACATTCTTCCCATTGATGATACTGTTGAAGGTGTCACCGGCAATCTCTTTGATGCTTACTTGAAACCATATTTCTTAGAGGCTTATCGTCCTGTCAGAAAGGGGGATCTATTTCTCGTCCGAGGAGGGATGAGAAGTGTAGAATTTAAGGTCATTGAAACTGATCCTGGGGAGTATTGTGTGGTTGCTCCAGACACTGAAATATTCTGTGAGGGGGAACCTGTGAAAAGAGAGGATGAAGAAAGGCTAGATGAGGTTGGGTATGATGATGTGGGTGGTGTCAGGAAGCAAATGGCACAAATTCGTGAATTGGTAGAGCTTCCACTGAGACATccacaactttttaaatcaattggtGTGAAACCACCCAAAGGAATTTTGCTGTATGGACCCCCAGGCTCTGGTAAGACTTTAATAGCTAGAGCTGTTGCTAATGAAACTGGAGCGTTCTTCTTTTGTATCAATGGCCCAGAGATTATGTCCAAACTGGCTGGAGAGAGTGAAAGCAATCTCAGGAAAGCATTTGAAGAAGCTGAAAAGAATGCTCCCTCCATCATCTTTATTGATGAGATTGATTCTATTGCACCCAAGCGGGAGAAGACACATGGTGAAGTTGAAAGGAGGATTGTTTCACAACTTTTGACTCTTATGGATGGATTGAAATCTCGTGCCcatgttattgttattggagCTACAAATCGGCCAAATAGCATTGACCCTGCATTGAGAAGGTTTGGTAGATTTGATAGGGAAATTGATATTGGTGTTCCTGATGAAGTTGGGAGACTTGAAGTCCTTCGCATTCATACCAAAAACATGAAGCTTTCAGATGATGTTGATTTAGAGAGAATTGCAAAAGATACTCATGGATATGTTGGTGCTGACCTTGCTGCCCTTTGCACGGAAGCTGCTCTGCAATGCATTAGGGAGAAGATGGACGTCATTGATTTGGAAGATGAGAATATTGATGCTGAAATACTGAATTCTATGGCAGTTTCAAATGAGCATTTCCAGACTGCTCTAGGAACAAGCAATCCATCTGCTTTACGAGAAACTGTTGTTGAGGTGCCTAATGTCAGCTGGGATGATATTGGAGGCCTTGAGAATGTCAAGCGTGAGCTGCAAGAGACTGTTCAATATCCTGTGGAGCACccagaaaaatttgaaaagtttggtATGTCACCATCAAAAGGAGTCCTCTTCTATGGTCCTCCGGGATGTGGGAAAACTTTGTTGGCCAAAGCAATTGCTAATGAATGTCAAGCTAACTTCATCAGTGTGAAAGGCCCAGAATTGCTCACTATGTGGTTTGGTGAAAGTGAAGCCAATGTTCGAGAAATTTTTGACAAGGCCAGACAATCAGCTCCATGTGTTCTCTTCTTTGATGAGCTTGACTCCATTGCTACTCAGAGAGGAAGTAGTGTTGGGGATGCTGGTGGTGCTGCTGATAGAGTTCTAAATCAACTTCTGACTGAAATGGATGGCATGTCTGCCAAAAAGACCGTGTTCATAATTGGGGCAACCAACAGACCTGACATCATTGACCCAGCACTTCTTCGGCCTGGTCGTCTAGATCAATTGATCTATATTCCTCTTCCTGATGAGGAGTCCCGTTATCAAATCTTCAAGGCTTGCATGAGGAAGTCACCTGTCTCAAAAGATGTTGATTTGAGAGCACTAGCTAAGTATACTCAAGGCTTTAGCGGTGCTGATATAACAGAGATATGCCAGCGAGCATGCAAATATGCTATTAGAGAAAACATAGAAAAGGACTTAGAGCGcgagaggaaaagaagagaaaacccTGAGGCCATGGATGAAGACAATGAGGAAGATGTTGCGGAGATCAAGGCTGCCCATTTTGAAGAGTCAATGAAGTATGCACGTAGGAGTGTTAGTGATGCTGATATACGCAAATACCAGGCATTTGCTCAGACCTTACAGCAATCCCGGGGCTTTGGAAGCGATTTTAGGTTTCCAGAGACTGGAGGCAGGACCGTCGGATCTGATCCCTTTGCAACTTCCGCTGGTGGGGCCGATGAAGATGATCTGTATAGTtag 2418 0.4338 MSHQGESSDSKLGKKDFSTAILERKKSPNRLIVDEAINDDNSVVSMHPKTMEKLQLFRGDTILIKGKKRRDTICIALADENCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDENIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKACMRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDLERERKRRENPEAMDEDNEEDVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSDFRFPETGGRTVGSDPFATSAGGADEDDLYS 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2461 805 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 31 767 IPR005938 GO:0016787
Ssu3g2461 805 MobiDBLite consensus disorder prediction 772 805 - -
Ssu3g2461 805 PANTHER AAA-FAMILY ATPASE 5 781 - -
Ssu3g2461 805 Pfam AAA+ lid domain 397 439 IPR041569 -
Ssu3g2461 805 Pfam AAA+ lid domain 673 711 IPR041569 -
Ssu3g2461 805 ProSitePatterns AAA-protein family signature. 345 363 IPR003960 GO:0005524|GO:0016887
Ssu3g2461 805 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 5 781 - -
Ssu3g2461 805 Gene3D - 655 763 - -
Ssu3g2461 805 SUPERFAMILY Cdc48 domain 2-like 112 204 IPR029067 -
Ssu3g2461 805 Pfam Cell division protein 48 (CDC48), domain 2 132 195 IPR004201 -
Ssu3g2461 805 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 476 764 IPR027417 -
Ssu3g2461 805 Gene3D - 210 374 IPR027417 -
Ssu3g2461 805 Gene3D - 376 467 - -
Ssu3g2461 805 ProSitePatterns AAA-protein family signature. 621 639 IPR003960 GO:0005524|GO:0016887
Ssu3g2461 805 SUPERFAMILY ADC-like 26 110 IPR009010 -
Ssu3g2461 805 Pfam Cell division protein 48 (CDC48), N-terminal domain 30 111 IPR003338 -
Ssu3g2461 805 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 466 IPR027417 -
Ssu3g2461 805 Gene3D - 468 651 IPR027417 -
Ssu3g2461 805 CDD AAA 484 651 - -
Ssu3g2461 805 SMART AAA_5 241 377 IPR003593 -
Ssu3g2461 805 SMART AAA_5 514 653 IPR003593 -
Ssu3g2461 805 SMART CDC48_2_2 130 196 IPR004201 -
Ssu3g2461 805 Gene3D - 7 112 - -
Ssu3g2461 805 Pfam ATPase family associated with various cellular activities (AAA) 518 651 IPR003959 GO:0005524|GO:0016887
Ssu3g2461 805 Pfam ATPase family associated with various cellular activities (AAA) 245 374 IPR003959 GO:0005524|GO:0016887
Ssu3g2461 805 SMART CDC48_N_2 30 113 IPR003338 -
Ssu3g2461 805 CDD AAA 211 374 - -
Ssu3g2461 805 Gene3D - 113 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2461 Ssu-Chr3 76397649 76402994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2461 447 710 Calmodulin-binding Proteins AT3G56690 47.727 2.26e-79 274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2461 3 76397649 76402994 Ssu3g2461 3 76397649 76402994 ECH