Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2459 ATGGTGTCCGACGCCAGCAAGAAGAAGGCTGCACAGAAGAAggccgccgccgccgccaagAGAGGTGGCAAGGCCGCCGCTGCCGCCATCGCCGCAGCTTCTTCCAAAGCCGCCGATAAGGTCGCCAACGGAATCGCCGATATTCAGATATCGGATCGGACCTGCACCGGCGTCCTCTGTTCCCATCCTCTTTCCAGAGATATTCGGATAGAGTCTCTCTCTGTTACATTCCATGGGCATGATCTCATTGTTGATTCTGAATTGGAGCTAAATTATGGAAGGCGTTATGGTTTGCTTGGATTAAATGGTTGTGGAAAATCTACACTGCTTGCAGCCATCGGTTGTCGGGAACTTCCAATTCCTGACCACATGGATATCTATCACCTTTCCAGGGAGATTGAAGCCTCTGACATGTCTGCATTGGAAGCTGTCATAAGCTGCGACGAAGAAAGGTTGAAATTGGAGAAAGAAGTTGAAGCTTTGGCTGCACAGGATGATGGAGGTGGTGAATCCCTTGAGCGCGTTTATGAACGATTGGATGCCCTAGATGCATCAACTGCAGAAAAGCGTGCTGCTGAAATCTTACATGGTCTTGGCTTCAACAAGCAAATGCAGGCAAAGAAGACACGTGATTTTTCTGGTGGCTGGAGAATGAGAATTGCGTTAGCGCGAGCTCTATTTATGAACCCAACCATTCTTCTACTTGATGAACCAACCAATCACCTTGATTTGGAAGCTTGTGTGTGGCTGGAGGAGAATTTGAAGAAGTTTGACCGTATTCTGGTTGTGATTTCACACTCTCAGGACTTTCTTAATGGTGTCTGCACAAATATTATTCACatgcaaaacaaaaaactaaagcTATACACTGGTAACTATGATCAATATGTTCAGACACGTTCTGAGCTAGAAGAGAACCAGATGAAACAGTACAAGTGGGAGCAGGAGCAGATTGCCTCAATGAAGGAATATATTGCCCGATTTGGCCATGGTTCTGCTAAACTAGCTCGCCAGGCACAGAGCAAGGAGAAAACACTGGCAAAAATGGAACGAGGTGGACTTACAGAGAAGGTGGTCAGAGACAAAGTTTTGGTATTCCGTTTTACTGATGTGGGAAAACTTCCCCCTCCTGTTCTCCAGTTTGTTGAGGTGACATTTGGTTATACTCCTGATAACCTCATATACAAGAACATTGACTTTGGGGTTGATTTAGATTCTAGGGTGGCACTGGTTGGACCCAATGGTGCTGGGAAGAGTACGCTACTGAAGCTAATGACAGGTGATTTGATGCCTAATGATGGCATGGTACGACGTCATAATCATCTTCGGATTGCACAATATCACCAGCATTTGGCCGAAAAGCTAGACTTGGAAATGCCTGCTCTCCAGTTTATGATTAAAGAATACCCTGGAAATGAGGAAGAGAAGATGAGGGCAGCGATTGGGAAGTTTGGGCTGTCAGGTAAAGCCCAGGTGATGCCTATGAAGAACTTGTCTGATGGGCAGAGGAGCCGAGTGATATTTGCTTGGTTAGCTTGGAGGCAGCCTCATATGCTTCTTTTGGATGAGCCAACTAATCATTTGGATATTGAGACAATTGACTCGTTGGCTGAGGCATTGAATGAATGGGACGGTGGCATGGTGCTTGTCAGCCATGATTTTAGGCTCATCAATCAGGTTGCCCATGAGATATGGGTATGTGCTGATCAAACTGTGACCAGATGGGAGGGTGACATTATGGATTTCAAGGAGCATCTAAAGTCAAAGGCGGGTTTATCTGACTGA 1785 0.4499 MVSDASKKKAAQKKAAAAAKRGGKAAAAAIAAASSKAADKVANGIADIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLAAIGCRELPIPDHMDIYHLSREIEASDMSALEAVISCDEERLKLEKEVEALAAQDDGGGESLERVYERLDALDASTAEKRAAEILHGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVISHSQDFLNGVCTNIIHMQNKKLKLYTGNYDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKVLVFRFTDVGKLPPPVLQFVEVTFGYTPDNLIYKNIDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLMPNDGMVRRHNHLRIAQYHQHLAEKLDLEMPALQFMIKEYPGNEEEKMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAWRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQTVTRWEGDIMDFKEHLKSKAGLSD 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2459 594 ProSitePatterns ABC transporters family signature. 212 226 IPR017871 GO:0005524
Ssu3g2459 594 Pfam ABC transporter 86 240 IPR003439 GO:0005524
Ssu3g2459 594 SMART AAA_5 92 294 IPR003593 -
Ssu3g2459 594 SMART AAA_5 404 571 IPR003593 -
Ssu3g2459 594 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 379 594 IPR003439 GO:0005524
Ssu3g2459 594 CDD ABCF_EF-3 68 285 - -
Ssu3g2459 594 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 315 IPR027417 -
Ssu3g2459 594 Coils Coil 286 306 - -
Ssu3g2459 594 Pfam ABC transporter 395 526 IPR003439 GO:0005524
Ssu3g2459 594 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 68 308 IPR003439 GO:0005524
Ssu3g2459 594 Gene3D - 343 592 IPR027417 -
Ssu3g2459 594 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 594 - -
Ssu3g2459 594 Pfam ABC transporter 279 355 IPR032781 -
Ssu3g2459 594 Gene3D - 68 332 IPR027417 -
Ssu3g2459 594 CDD ABCF_EF-3 379 571 - -
Ssu3g2459 594 PANTHER - 1 594 - -
Ssu3g2459 594 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 573 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2459 Ssu-Chr3 76362947 76366317 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2459 379 572 Calmodulin-binding Proteins AT2G36910 25.000 4.74e-09 57.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2459 3 76362947 76366317 Ssu3g2459 3 76362947 76366317 ECH