Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2457 ATGCAGAAATCAGGGTACGGTCGCGACGGAATATACAGGTCTCTAAGGCCATCGTTGCTTCTCCCAAAGGACCCCAACCTCTCCCTCGTCTCATTCCTCTTCCAAAGCGTTTCCTCATTCCCCGCCAAAACCGCCCTCGTCGATGCCGACTCTTCCCAAACCCTCTCCTTTGCGCAACTCAAGTCGCAAGTCGCTACGCTCGCCCACGGTTTCCTCAAACTAGGCATAACCAAAAACGACGTCGTCCTCCTGCTCGCTCCCAACAGCATCCACTTCCCCATATGCTTCCTCGCCGTCACCGCCATCGGTGGCGTCGTCTCCACCGCCAACCCCATCTACACCGTCGACGAACTCTCGAAGCAAGTCAAAGACTGCAACCCCAAGCTCGTGATCACCGTCCCCGAATTATGGAACAAAGCGAAGAGCCTCAACCTCTCCGCAGTTATTCTCGGCGCCGCAAACGCAGCGCCGAGAATCACGAGTTTCGAGGAGGTGATGGAGACGGCTGGGGCGGGGGCGGAGCTGCCGGAGATTGGCGTGAGGCAGGGCGACGTGGCGGCGCTGCTGTACTCCTCCGGGACCACGGGGGCGAGCAAGGGCGTGGTGCTCACGCACCGGAACTTCATCGCGGCGGCGGCGATGATCGGCATGGACGACGAGCTGGCCGGGGAGCCAAACGACGTGTTCCTCTGCGTTTTGCCGATGTTCCACGTGTTCGGGCTCGCGGTTCTGACGTACGCGTCGCTGCGGCGAGGGAGCGCGGTGGTGGCGATGAGGAGGTTCGAGTTCGAGGCGTTTCTGAAGGCGATTGAGAGGCATAGGGTTACGAAGCTGTGGCTCGTGCCTCCGATCGTGCTTGCTCTGGCGAAACAGAGTGTGGTTCGGAAGTATGATCTCTCCTCGTTGAAGCGTATTGCTTCGGGTGCTGCACCTCTTGGGAAAGAGTTGATGCAAGAGTGTGCCAAACGTTTTCCTCATGCTGCCATTTGTCAGGGCTATGGTATGACAGAAACTTGTGGCGTTGTTGCTATAGAGAACCCAAGAGTAGGGAATCGTCATACTGGCGCAACGGGAACGCTGGTTTCGGGAGTCGAAGCTCAAATAGTGAGTGTGGATACACAGAAGTCGCTCCCTCCTAGACAGTTGGGGGAGATATGGGTACGAGGTCCTAACATGATGAAAGGTTATCACAACACTCCACAGGCCACGAGATTGACTATAGATGAAAAAGGGTGGGTACATACAGGAGATCTTGGATATTTTGATGAAGATGGACAACTTTATGTGGTTGACCGTATCAAAGAACTGATCAAGTACAAAGGTTTTCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTAGAGGCTGTTGTTGTCCCACTTCCGGATGATGAGGCTGGTGAGGTTCCAATTGCCTATGTTGTTCGTTTACCCAATAGTGCACTGACTGAAGAAGAAATTCAGAAGTTTATTGCTAATCAgGTTGCACCTTTCAAAAAATTGCGAAGGGTGACATTCATCAACAGTGTTCCTAAGACAGCTTCAGGAAAAATTCTCAGAAGAGAGCTTACTGCGAAAGCACgatccaaaatataa 1614 0.5328 MQKSGYGRDGIYRSLRPSLLLPKDPNLSLVSFLFQSVSSFPAKTALVDADSSQTLSFAQLKSQVATLAHGFLKLGITKNDVVLLLAPNSIHFPICFLAVTAIGGVVSTANPIYTVDELSKQVKDCNPKLVITVPELWNKAKSLNLSAVILGAANAAPRITSFEEVMETAGAGAELPEIGVRQGDVAALLYSSGTTGASKGVVLTHRNFIAAAAMIGMDDELAGEPNDVFLCVLPMFHVFGLAVLTYASLRRGSAVVAMRRFEFEAFLKAIERHRVTKLWLVPPIVLALAKQSVVRKYDLSSLKRIASGAAPLGKELMQECAKRFPHAAICQGYGMTETCGVVAIENPRVGNRHTGATGTLVSGVEAQIVSVDTQKSLPPRQLGEIWVRGPNMMKGYHNTPQATRLTIDEKGWVHTGDLGYFDEDGQLYVVDRIKELIKYKGFQVAPAELEGLLVSHPEILEAVVVPLPDDEAGEVPIAYVVRLPNSALTEEEIQKFIANQVAPFKKLRRVTFINSVPKTASGKILRRELTAKARSKI 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2457 537 CDD 4CL 21 529 - -
Ssu3g2457 537 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 536 - -
Ssu3g2457 537 Pfam AMP-binding enzyme 35 439 IPR000873 -
Ssu3g2457 537 ProSitePatterns Putative AMP-binding domain signature. 188 199 IPR020845 -
Ssu3g2457 537 Pfam AMP-binding enzyme C-terminal domain 448 523 IPR025110 -
Ssu3g2457 537 Gene3D - 435 536 IPR045851 -
Ssu3g2457 537 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 4 536 - -
Ssu3g2457 537 Gene3D - 10 434 IPR042099 -
Ssu3g2457 537 SUPERFAMILY Acetyl-CoA synthetase-like 22 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2457 Ssu-Chr3 76292876 76297043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2457 1 537 Monolignol Biosynthesis Gene Families AT4G05160 66.912 0.0 778
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2457 K01904 - gmx:100808944 886.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2457 3 76292876 76297043 Ssu3g2457 3 76292876 76297043 ECH
Ssu8g0610 8 9960120 9964273 Ssu3g2457 3 76292876 76297043 PCT