Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2454 atgggaagAGCTCCGTGTTGTGACAAGGCAAGTGTTAAGAAAGGGCCATGGTCACCAGAAGAAGACACAAAGCTGAAGGAGTACATAGAAAAGCATGGAACTGGAGGGAATTGGATTGCTCTTCCTCAGAAAGCTGGTCTTAAGAGATGTGGGAAAAGTTGCAGATTGAGATGGCTCAACTATCTCAGGCCCAACATTAAGCATGGAGATTTCTCCGATGAGGAAGACAGAATAATTTGCAGCCTCTATGTTAATATTGGAAGCAGGTGGTCAATTATAGCTGCTCAGTTACCAGGAAGGACTGACAATGATATCAAGAACTACTGGAACACCAAGTTGAAGAAAAAGCTCATGGCGTTGCTACCTCTTTCTCATCACAGAAAACAACCTTCATTTCCATCCTCTTCCCTTCAAAACCCTCCACCCTCTCCTTCACCTCACCAACTGTACGGAGAGTACTGCACCTACAGCCCAATAACAACCACTTTCACAAGTATTGAACCCCTTTCCCTTCCTTCAAGTAACTATGCAAGCCCAACAACCTCGGTTTCTCACCCCTTTTACCAAAGCCAAGATACCATGGCTAGCATCAGTCCCATGCAATGCTATTACCCTATCAAAGACAGCATGCTCATGTTTGGAAGCGAAGGAAGTTGCAGTTCCTCTGATGGCAGCTGCACTCAAGGGagagaaataaagcaagaagaAATTGGTTACCACAGCTACAATGATAACATTATGCTAGGTTACACTAGCATTAACGATGGAGGTGAAAATGTTAACCAATATGGAGAAAAGTCATGTGTTGGTGGTTGCTTTAGCCAAACGCTAACACCGTTCGATTATGATCTCAAGGATATTAAGCAATTGATTAGTAGAAGCAGTAGCACTAGCTTCAATAATGTTGATGAAAACAAGACAGAAGAGGAGGCCATGTACCACTACTACTACTGA 954 0.4224 MGRAPCCDKASVKKGPWSPEEDTKLKEYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGDFSDEEDRIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMALLPLSHHRKQPSFPSSSLQNPPPSPSPHQLYGEYCTYSPITTTFTSIEPLSLPSSNYASPTTSVSHPFYQSQDTMASISPMQCYYPIKDSMLMFGSEGSCSSSDGSCTQGREIKQEEIGYHSYNDNIMLGYTSINDGGENVNQYGEKSCVGGCFSQTLTPFDYDLKDIKQLISRSSSTSFNNVDENKTEEEAMYHYYY 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2454 317 Gene3D - 70 136 - -
Ssu3g2454 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Ssu3g2454 317 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Ssu3g2454 317 CDD SANT 16 62 IPR001005 -
Ssu3g2454 317 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Ssu3g2454 317 Gene3D - 7 68 - -
Ssu3g2454 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Ssu3g2454 317 SMART sant 67 115 IPR001005 -
Ssu3g2454 317 SMART sant 13 64 IPR001005 -
Ssu3g2454 317 PANTHER OS09G0431300 PROTEIN 1 301 - -
Ssu3g2454 317 PANTHER TRANSCRIPTION FACTOR RAX3 1 301 - -
Ssu3g2454 317 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Ssu3g2454 317 MobiDBLite consensus disorder prediction 126 145 - -
Ssu3g2454 317 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Ssu3g2454 317 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2454 Ssu-Chr3 76246223 76247752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2454 1 119 MYB Transcription Factor Family AT5G57620 89.076 8.58e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu3g2454 Myb_DNA-binding 5.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2454 K09422 - gmx:100779919 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2454 3 76246223 76247752 Ssu3g2454 3 76246223 76247752 ECH
Ssu8g0611 8 9996348 9997911 Ssu3g2454 3 76246223 76247752 PCT